- 2858 Gamma ray documentation introduction (2858) (@CePowers)
- 2730 Simulation solver workflow (2730) (@andrewfullard)
- 2860 Cleanup codestyle workflow (2860) (@KasukabeDefenceForce)
- 2842 Update docs with regression data (2842) (@KasukabeDefenceForce)
- 2746 Remove
rpacket_trackingflag from tests workflow (2746) (@atharva-2001) - 2843 Close regression data files (2843) (@atharva-2001)
- 2848 Ruff
tardis/spectrum(2848) (@atharva-2001) - 2849 Ruff root files (2849) (@atharva-2001)
- 2862 Fix release 2024-10-14 CHANGELOG (2862) (@atharva-2001)
- 2861 Replace
setup_lfsaction with single file checkout (2861) (@atharva-2001) - 2857 Post-release 2024.10.14 (2857) (@tardis-bot)
- 2770 Restructure/detailed balance foundation (2770) (@wkerzendorf)
- 2833 Pytest Warnings Fix - 2 (2833) (@KasukabeDefenceForce)
- 2851 Fix codespell (2851) (@KasukabeDefenceForce)
- 2854 Remove black from environment yml and lock files. (2854) (@KasukabeDefenceForce)
- 2855 Remove black from docs and update with ruff (2855) (@KasukabeDefenceForce)
- 2853 Remove black from codestyle workflow (2853) (@KasukabeDefenceForce)
- 2824 fix typo for word boundaries in doc (2824) (@RyanGroneck)
- 2847 Ruff on tardis/simulation (2847) (@atharva-2001)
- 2845 Ruff
tardis/plasma(2845) (@atharva-2001) - 2838 Add zenodo badge in the release summary notes (2838) (@KasukabeDefenceForce)
- 2836 New Gammaray Packet Initialization Documentation (2836) (@CePowers)
- 2839 Fix mambaforge issue in STARDIS tests (2839) (@atharva-2001)
- 2840 Fix benchmarks 2 (2840) (@atharva-2001)
- 2841 Fix navigation sidebar on mobile (2841) (@KasukabeDefenceForce)
- 2835 Pre Release Zenodo Not Found (2835) (@atharva-2001)
- 2834 Fixes qgridnext import error in tests (2834) (@andrewfullard)
- 2816 Release Modifications (2816) (@atharva-2001)
- 2831 Failing benchmarks fix (2831) (@atharva-2001)
- 2823 Handle Test warnings (2823) (@KasukabeDefenceForce)
- 2830 Fix for #2820 (2830) (@atharva-2001)
- 2832 Failing Docs Fix (2832) (@atharva-2001)
- 2829 Ruff
tardis/transport(2829) (@atharva-2001) - 2828 Ruff
tardis/model(2828) (@atharva-2001) - 2827 Ruff
tardis/io(2827) (@atharva-2001) - 2826 Ruff Autofixes (tardis/analysis) (2826) (@atharva-2001)
- 2819 Handling for qgridnext installation (2819) (@andrewfullard)
- 2811 Update line_interaction_in_r after moving the packet (2811) (@Sumit112192)
- 2808 Migrate to Regression Data Completely (2808) (@atharva-2001)
- 2814 Move to qgridnext (2814) (@sarthak-dv)
- 2807 Add codespell workflow (2807) (@KasukabeDefenceForce)
- 2810 Post-release 2024.08.25 (2810) (@tardis-bot)
- 2809 Pre-release 2024.08.25 (2809) (@tardis-bot)
- 2795 Doc changes for RPacketTracker (2795) (@Sumit112192)
- 2806 Add molecular data exposure to tardis atom data (2806) (@jvshields)
- 2805 TARDIS Full Formal Integral Regression Tests (2805) (@atharva-2001)
- 2723 LIV Plot Tests (2723) (@sarthak-dv)
- 2804 Simulation Regression Tests (2804) (@atharva-2001)
- 2783 Simple Atom data refactor (2783) (@andrewfullard)
- 2794 Update research papers notebook and update the docs (2794) (@KasukabeDefenceForce)
- 2798 Remove deprecated setup.py (2798) (@KasukabeDefenceForce)
- 2803 Post-release 2024.08.18 (2803) (@tardis-bot)
- 2802 Pre-release 2024.08.18 (2802) (@tardis-bot)
- 2788 Update benchmark base (2788) (@officialasishkumar)
- 2785 Convert SDEC tests to Regression Data (2785) (@atharva-2001)
- 2799 Remove syrupy section from docs (2799) (@KasukabeDefenceForce)
- 2801 Fix file formats (2801) (@andrewfullard)
- 2784 Add Packet Wavelength filter to LIV Plot (2784) (@sarthak-dv)
- 2786 Macroatom restructure (2786) (@Rodot-)
- 2748 [restructure/plasma] Cleanup plasma assembly (2748) (@wkerzendorf)
- 2736 Track boundary interaction (2736) (@Sumit112192)
- 2782 Change parameters in benchmarks (2782) (@officialasishkumar)
- 2790 Post-release 2024.08.12 (2790) (@tardis-bot)
- 2789 Pre-release 2024.08.11 (2789) (@tardis-bot)
- 2759 Minor refactor of the spectrum solver (2759) (@andrewfullard)
- 2787 some spelling fixes in the docs (2787) (@zingale)
- 2778 Ruff Fix 2 (2778) (@atharva-2001)
- 2781 Update docstrings of Tracker tests (2781) (@Sumit112192)
- 2773 Opacity state restructure (2773) (@Rodot-)
- 2776 Post-release 2024.08.04 (2776) (@tardis-bot)
- 2775 Pre-release 2024.08.04 (2775) (@tardis-bot)
- 2749 Cache benchmark functions (2749) (@officialasishkumar)
- 2762 Fix ruff comments issue (2762) (@atharva-2001)
- 2767 Release Pipeline Fixes (2767) (@atharva-2001)
- 2758 Opacity state slice (2758) (@Rodot-)
- 2771 Add Extend Array Function (2771) (@Sumit112192)
- 2761 Donot run docs, benchmarks and stardis tests on draft PRs. (2761) (@KasukabeDefenceForce)
- 2720 Benchmark run_tardis with track_rpacket enabled (2720) (@Sumit112192)
- 2675 [Restructure/plasma] estimator cleanup (2675) (@wkerzendorf)
- 2670 Changed file path (2670) (@Knights-Templars)
- 2763 Add benchmark documentation (2763) (@officialasishkumar)
- 2719 Restructure Trackers (2719) (@Sumit112192)
- 2745 Address pytest warnings (2745) (@atharva-2001)
- 2753 Run stardis tests on Tardis PRs (2753) (@KasukabeDefenceForce)
- 2754 Ruff Workflow Fix (2754) (@atharva-2001)
- 2751 Post-release 2024.07.28 (2751) (@tardis-bot)
- 2750 Pre-release 2024.07.28 (2750) (@tardis-bot)
- 2718 Weighted Packet Sampler (2718) (@Rodot-)
- 2747 Commit hash of PR HEAD not found fix (2747) (@officialasishkumar)
- 2740 Adds number_of_packets property to the packet collection (2740) (@andrewfullard)
- 2735 Add solve method to SpectrumSolver (2735) (@andrewfullard)
- 2660 Add ruff workflow (2660) (@atharva-2001)
- 2744 fix docs build by removing the
parse_simulation_statefunction from thetardis.io.modelmodule and moving it to thetardis.io.model.parse_simulation_statemodule (2744) (@wkerzendorf) - 2742 Fix Codecov (2742) (@atharva-2001)
- 2664 [Restructure/plasma] Refactor the simulation state initialization (2664) (@wkerzendorf)
- 2734 Moves time explosion off the transport solver to the transport state (2734) (@andrewfullard)
- 2722 Refactor benchmarks (2722) (@officialasishkumar)
- 2613 [Restructure/plasma] restructure the Radiationfields (2613) (@wkerzendorf)
- 2731 Fast formal integral (2731) (@Rodot-)
- 2725 Fast Formal Integral (2725) (@Rodot-)
- 2728 Fix Failing docstr-cov Badge (2728) (@atharva-2001)
- 2727 Fix Cache Issues (2727) (@atharva-2001)
- 2726 Codecov fix (2726) (@atharva-2001)
- 2689 Spectrum refactor (2689) (@andrewfullard)
- 2721 Pre Release Workflow Fix (2721) (@atharva-2001)
- 2716 Implement last interaction tracker (2716) (@Sumit112192)
- 2717 Remove parameters and speed up benchmarks (2717) (@officialasishkumar)
- 2709 Add google analytics key to tardis docs (2709) (@KasukabeDefenceForce)
- 2711 Shifting git cliff changelog generator configuration to pyproject.toml (2711) (@KasukabeDefenceForce)
- 2713 Move pip tests to release workflow (2713) (@atharva-2001)
- 2699 Separate Continuum Tests (2699) (@atharva-2001)
- 2677 Last Interaction Velocity (2677) (@sarthak-dv)
- 2705 Montecarlo globals (limited scope) (2705) (@andrewfullard)
- 2703 Pre Release Fix (2703) (@atharva-2001)
- 2704 Shifting update refdata workflow to archive folder (2704) (@KasukabeDefenceForce)
- 2702 Benchmark fix for github actions (2702) (@officialasishkumar)
- 2640 Refactor and add more benchmarks for montecarlo (2640) (@officialasishkumar)
- 2698 Move setup environment steps to composite action (2698) (@atharva-2001)
- 2696 Adds continuum marker to pytest and continuum tests (2696) (@andrewfullard)
- 2667 Add arm64 conda-lock file (2667) (@atharva-2001)
- 2695 Logging - avoid the zero division warning (2695) (@DeerWhale)
- 2694 Change setup.cfg to pyproject.toml (2694) (@KasukabeDefenceForce)
- 2119 adding RPacketPlotter to TARDIS (2119) (@jayantbhakar)
- 2693 Post-release 2024.07.07 (2693) (@tardis-bot)
- 2692 Pre-release 2024.07.07 (2692) (@tardis-bot)
- 2656 fix benchmark action (2656) (@officialasishkumar)
- 2684 Fix hdf path for time_of_simulation in sdec plot (2684) (@sarthak-dv)
- 2652 I/O Refactoring (2652) (@andrewfullard)
- 2666 Add Ruff to TARDIS Environment (2666) (@atharva-2001)
- 2629 Updating github changes command in post release workflow (changelog fix) (2629) (@KasukabeDefenceForce)
- 2665 Fix benchmarks errors (2665) (@KasukabeDefenceForce)
- 2669 Updating "Environment update" section in tardis docs (2669) (@KasukabeDefenceForce)
- 2668 Adding analytics to tardis documentation (2668) (@KasukabeDefenceForce)
- 2609 [Restructure/plasma] Initial Opacities Refactor (2609) (@wkerzendorf)
- 2659 Update Ruff Config (2659) (@atharva-2001)
- 2649 Pre-release 2024.06.09 (2649) (@tardis-bot)
- 2647 Move rpacket_trackers_to_dataframe function to packet_trackers.py file (2647) (@Sumit112192)
- 2608 Refactoring of Monte Carlo transport (2608) (@andrewfullard)
- 2518 Convergence restructure (2518) (@andrewfullard)
- 2641 Update Lock Files 2024 (2641) (@atharva-2001)
- 2638 Move RPacketTracker class to a new file packet_trackers.py (2638) (@Sumit112192)
- 2630 Added HDF documentation. (2630) (@airvzxf)
- 2573 Bugfix: Added a conditional statement and changed the error type that was being handled in
tardis.io.model_reader.read_uniform_abundances. (2573) (@KC210404) - 2631 Edit Generation Tests (2631) (@atharva-2001)
- 2639 Pre-release 2024.06.02 (2639) (@tardis-bot)
- 2628 Updating actions to their latest version (2628) (@KasukabeDefenceForce)
- 2633 Fixed the imported modules. (2633) (@airvzxf)
- 2632 Removing checkout to the tardis repo step from setup lfs workflow (2632) (@KasukabeDefenceForce)
- 2627 Pre-release 2024.05.26 (2627) (@tardis-bot)
- 2624 Updating the docs to use local atomic data (2624) (@KasukabeDefenceForce)
- 2607 Remove DokuWiki Code (2607) (@atharva-2001)
- 2584 PacketSource should contain
.to_hdf()method (2584) (@atharva-2001) - 2603 NumberDensity as Input to plasma (2603) (@wkerzendorf)
- 2623 Revert "Updating the worfklow to use atomic data from cache rather th… (2623) (@KasukabeDefenceForce)
- 2621 Fixing PR checkout in build docs job (2621) (@KasukabeDefenceForce)
- 2618 Fixing build docs yaml to detect branches on forks (2618) (@KasukabeDefenceForce)
- 2619 Fixed #2564 by bringing back the image from a previous commit (2619) (@Sumit112192)
- 2611 Converted the reference data to regression in test TARDIS full (2611) (@airvzxf)
- 2614 Pre-release 2024.05.12 (2614) (@tardis-bot)
- 2587 Trigger docs only when something inside the docs folder changed (2587) (@KasukabeDefenceForce)
- 2560 Bug t radiative (2560) (@Sumit112192)
- 2610 LFS submodule error fix (2610) (@atharva-2001)
- 2605 Move montecarlo to transport and flatten montecarlo numba (2605) (@andrewfullard)
- 2565 GSoC 2024 | Benchmark | First objective | Israel Roldan (2565) (@airvzxf)
- 2606 Pre-release 2024.05.05 (2606) (@tardis-bot)
- 2561 Documentation typo (2561) (@Sumit112192)
- 2598 Only Run Benchmarks Workflow When Owner is
tardis-sn(2598) (@atharva-2001) - 2589 Solve Duplicate Code in GitHub Action Workflows (2589) (@atharva-2001)
- 2528 Convergence plot correction: Use step plots (2528) (@sarthak-dv)
- 2546 Gamma-ray packet source refactor (2546) (@andrewfullard)
- 2577 Abundance widget bug fix (2577) (@Sumit112192)
- 2597 Modify Update Refdata to Push Regression Data Changes (2597) (@atharva-2001)
- 2595 Fixes IntegrationError causing refdata generation failure (2595) (@andrewfullard)
- 2562 Reference Data Generation Fixes (2562) (@atharva-2001)
- 2593 Pre-release 2024.04.21 (2593) (@tardis-bot)
- 2525 Montecarlo configuration refactor (2525) (@andrewfullard)
- 2578 Updating embedded links in docs with new file names "tutorial_" and "how_to_" (2578) (@erinvisser)
- 2509 Precommit (2509) (@ntchen)
- 2580 Removing flake8 job. (2580) (@KasukabeDefenceForce)
- 2583 Pre-release 2024.04.14 (2583) (@tardis-bot)
- 2328 Grotrian diagram IPyWidget functionality (2328) (@AyushiDaksh)
- 2576 Pre-release 2024.04.07 (2576) (@tardis-bot)
- 2563 Recategorizing tutorials as how-to guides to follow diataxis structure (2563) (@erinvisser)
- 2542 Consistent units in packet source (2542) (@andrewfullard)
- 2574 Updated helium nlte page in docs with in-text citation (2574) (@erinvisser)
- 2552 Multiindex dataframe (2552) (@Knights-Templars)
- 2566 Pre-release 2024.03.31 (2566) (@tardis-bot)
- 2349 Implemented Model Reader for CMFGen example (Also refactored Stella Reader) (2349) (@xansh)
- 2554 Remove Azure Compare Refdata Pipeline (2554) (@atharva-2001)
- 2555 corrected blackbody luminosity density equation (2555) (@CePowers)
- 2556 fixing typos, including pytest issue (2556) (@erinvisser)
- 2535 Path.replace bug (2535) (@Sumit112192)
- 2553 Fix Cache IDs in Tests Workflow (2553) (@atharva-2001)
- 2551 Pre-release 2024.03.17 (2551) (@tardis-bot)
- 2253 Fix for widgets displaying code in commandline (2253) (@shreyas3156)
- 2529 PR to separate main gamma ray loop (2529) (@Knights-Templars)
- 2541 Fix units for virtual packet properties in MonteCarloTransportState (2541) (@sarthak-dv)
- 2533 Fix broken URL in generating_widgets.ipynb (2533) (@sarthak-dv)
- 2536 Pre-release 2024.03.10 (2536) (@tardis-bot)
- 2522 prevent float overflow when calculating He I population (2522) (@DeerWhale)
- 2524 Update index.rst (2524) (@wkerzendorf)
- 2521 Pre-release 2024.02.18 (2521) (@tardis-bot)
- 2520 update the lock file link in doc (2520) (@DeerWhale)
- 2517 Pre-release 2024.02.11 (2517) (@tardis-bot)
- 2460 update installation documentation for tardis (2460) (@erinvisser)
- 2516 fixed the difference between the power of pi in code and function above (2516) (@erinvisser)
- 2504 Update number of shells in SimulationState (2504) (@DeerWhale)
- 2501 Fix/nlte ionization matrix (2501) (@wkerzendorf)
- 2512 Estimators restructure cleanup (2512) (@andrewfullard)
- 2492 Restructure/separate transport state (2492) (@wkerzendorf)
- 2506 Remove workflow file that installs TARDIS using conda (2506) (@atharva-2001)
- 2476 Restructure/transport solver (2476) (@wkerzendorf)
- 2503 Pre-release 2024.01.14 (2503) (@tardis-bot)
- 2502 Pre-release 2024.01.07 (2502) (@tardis-bot)
- 2473 A syrupy replacement (2473) (@wkerzendorf)
- 2474 Restructure radiation field (2474) (@wkerzendorf)
- 2455 Use Mamba Instead of Conda When Running Benchmarks (2455) (@atharva-2001)
- 2490 Fix viz sdec (2490) (@AlexHls)
- 2445 Restructure/abundance (2445) (@wkerzendorf)
- 2479 Check if atom data download exists (2479) (@wkerzendorf)
- 2448 Decay energy chain (2448) (@Knights-Templars)
- 2478 Add ruff rules and docs (2478) (@AlexHls)
- 2459 Update plasma configuration documentation (2459) (@AlexHls)
- 2477 Pre-release 2023.11.26 (2477) (@tardis-bot)
- 2471 Reading in decay radiation data in atom data (2471) (@Knights-Templars)
- 2470 Add astropy import guard (2470) (@AlexHls)
- 2413 Tests Plasma Using Syrupy (2413) (@atharva-2001)
- 2466 Pre-release 2023.11.05 (2466) (@tardis-bot)
- 2461 NLTE Ionization solver polish (2461) (@AlexHls)
- 2462 Update docstr-cov.yml to fix failing action (2462) (@andrewfullard)
- 2458 Enable nlte ionization as plasma component (2458) (@AlexHls)
- 2453 Fix bug in relativistic packet source (2453) (@chvogl)
- 2457 Add verbose assert to NLTE rate equation (2457) (@AlexHls)
- 2452 Pre-release 2023.10.20 (2452) (@tardis-bot)
- 2432 Remove lock file creation from pre release workflow (2432) (@atharva-2001)
- 2450 Add FAQ section to documentation (2450) (@AlexHls)
- 2422 restructure of geometry (2422) (@wkerzendorf)
- 2441 Change glob patterns in
setup.cfg(2441) (@atharva-2001) - 2447 Fix numba parallel issues (2447) (@AlexHls)
- 2443 Fix duplicate entries in continuum line list (2443) (@AlexHls)
- 2434 Added a function to calculate shell masses (2434) (@Knights-Templars)
- 2425 Modified how setup input energy takes isotope name. Earlier it was ga… (2425) (@Knights-Templars)
- 2428 add linelist exposure to atom data and reader, built on current (2428) (@jvshields)
- 2426 Disabled formal integral for continuum interaction (2426) (@AlexHls)
- 2424 Ignore tests in docstr coverage (2424) (@atharva-2001)
- 2421 rename simulation_state2 (2421) (@wkerzendorf)
- 2417 rename RadialModel1D to SimulationState (2417) (@wkerzendorf)
- 2415 In gamma ray code : Changed times to np.geomspace (2415) (@Knights-Templars)
- 2410 upgrading env in 2022 (2410) (@wkerzendorf)
- 2411 Pre-release 2023.09.17 (2411) (@tardis-bot)
- 2407 Allow Simulation Tests to Run Independently (2407) (@atharva-2001)
- 2408 Pre-release 2023.09.10 (2408) (@tardis-bot)
- 2288 Add documentation for LFS caching, The Bridge and Save Atomic Files Workflow (2288) (@atharva-2001)
- 2406 Pre-release 2023.09.03 (2406) (@tardis-bot)
- 2393 Restructure readers (2393) (@wkerzendorf)
- 2404 Pin Sphinx to <= 7.1 (2404) (@atharva-2001)
- 2403 Reading fully ionized species with species_string_to_tuple (2403) (@sonachitchyan)
- 2398 Disable Parallelization (2398) (@atharva-2001)
- 2401
asv runcontinue on error (2401) (@atharva-2001) - 2399 Update documentation about the parallelization problem (2399) (@atharva-2001)
- 2400 Add
__init__.pyinradiation_fieldsubpackage (2400) (@atharva-2001) - 2396 Fix for Slack message (2396) (@epassaro)
- 2397 Pre-release 2023.08.20 (2397) (@tardis-bot)
- 2338 Test conda-forge package installation (2338) (@epassaro)
- 2224 Fix references and typos in documentation (2224) (@shreyas3156)
- 2385 Creating collisional excitation/deexcitation coefficient matrix for NLTE excitation treatment (2385) (@sonachitchyan)
- 2142 added documentation for using particular refdata files for unit testing (2142) (@jayantbhakar)
- 2395 Fixing the shape of the solution vector to be accurate in NLTE excitation treatment (2395) (@sonachitchyan)
- 2353 Benchmarks Comments and Atom Data Cache BugFix (2353) (@atharva-2001)
- 2386 Integrate density in state object (2386) (@wkerzendorf)
- 2392 Post-release 2023.08.13 (2392) (@tardis-bot)
- 2391 Pre-release 2023.08.13 (2391) (@tardis-bot)
- 2379 Tests for doppler factor functions (2379) (@sonachitchyan)
- 2348 Fixes gamma-ray notebook to run more easily (2348) (@andrewfullard)
- 2381 Removed hardcoding of RPacket radius (2381) (@xansh)
- 2384 Post-release 2023.08.06 (2384) (@tardis-bot)
- 2383 Pre-release 2023.08.06 (2383) (@tardis-bot)
- 2382 Remove outdated docstring from test_montecarlo.py (2382) (@chvogl)
- 2376 Add init.py to energy input module (2376) (@andrewfullard)
- 2373 Post-release 2023.07.30 (2373) (@tardis-bot)
- 2372 Pre-release 2023.07.30 (2372) (@tardis-bot)
- 2365 integrate radiation field (2365) (@wkerzendorf)
- 2371 Prevent empty convergence plot Error when n_iteration=1 (2371) (@DeerWhale)
- 2369 Post-release 2023.07.23 (2369) (@tardis-bot)
- 2368 Pre-release 2023.07.23 (2368) (@tardis-bot)
- 2367 integrate new packetsource (2367) (@wkerzendorf)
- 2366 New packet source (extending 2352) (2366) (@wkerzendorf)
- 2354 removed duplicate entry of afloers (2354) (@afloers)
- 2360 restructure configuration object (2360) (@wkerzendorf)
- 2361 add deprecated decorator (2361) (@wkerzendorf)
- 2359 Rename NumbaPlasma to OpacityState (2359) (@andrewfullard)
- 2313 Grotrian Diagram Plot Appearance (2313) (@AyushiDaksh)
- 2357 Post-release 2023.07.16 (2357) (@tardis-bot)
- 2356 Pre-release 2023.07.16 (2356) (@tardis-bot)
- 2355 Fixed spelling mistake in Wien's displacement law (2355) (@afloers)
- 2351 Post-release 2023.07.09 (2351) (@tardis-bot)
- 2350 Pre-release 2023.07.09 (2350) (@tardis-bot)
- 2347 Fix frame transformations of continuum opacity (2347) (@chvogl)
- 2139 Gamma ray refactor (2139) (@andrewfullard)
- 2327 Refactor Model Reader on the Stella example (2327) (@wkerzendorf)
- 2346 Post-release 2023.07.02 (2346) (@tardis-bot)
- 2345 Pre-release 2023.07.02 (2345) (@tardis-bot)
- 2344 Make MontecarloTransport and montecarlo_numba track the last line interaction shell ids for real and virtual packets (2344) (@AyushiDaksh)
- 2343 Rename RPacketTracker.interact_id to RPacketTracker.num_interactions (2343) (@AyushiDaksh)
- 2221 Fix typos in repository (2221) (@AyushiDaksh)
- 2330 Benchmarks Push To Repo Bug Fix (2330) (@atharva-2001)
- 2335 Dispatch Compare Refdata Event to Refdata Repo (2335) (@atharva-2001)
- 2305 Fix to helium indexing in NLTE (2305) (@aoifeboyle)
- 2341 Remove duplicated continuum interaction code (2341) (@chvogl)
- 2340 Post-release 2023.06.25 (2340) (@tardis-bot)
- 2339 Pre-release 2023.06.25 (2339) (@tardis-bot)
- 2337 Separate the last iteration from Simulation.run() (2337) (@xansh)
- 2219 Remove dead (unused) fixtures (2219) (@xansh)
- 2336 Fix doc failure after restructuring packet source seed (2336) (@xansh)
- 2329 Move packet seeds logic into PacketSource instead of MontecarloTransport (2329) (@xansh)
- 2326 Track bf and ff opacities with vpackets (2326) (@ymatsumu)
- 2334 Post-release 2023.06.18 (2334) (@tardis-bot)
- 2333 Pre-release 2023.06.18 (2333) (@tardis-bot)
- 2311 Make nthreads a property of MontecarloRunner instead of Simulation class (2311) (@xansh)
- 2260 [WIP] Basic Benchmarks Using ASV (2260) (@atharva-2001)
- 2317 Rename MontecarloRunner to MontecarloTransport (2317) (@xansh)
- 2307 Post-release 2023.06.04 (2307) (@tardis-bot)
- 2306 Pre-release 2023.06.04 (2306) (@tardis-bot)
- 2302 Disable HDF5 file locking on documentation workflow (2302) (@epassaro)
- 2300 Post-release 2023.05.28 (2300) (@tardis-bot)
- 2299 Pre-release 2023.05.28 (2299) (@tardis-bot)
- 2298 Bump hdf5 to v1.12 (2298) (@epassaro)
- 2297 Post-release 2023.05.21 (2297) (@tardis-bot)
- 2289 Pre-release 2023.05.07 (2289) (@tardis-bot)
- 2201 Changing construction of the first guess and coefficient matrices in NLTE solver (2201) (@sonachitchyan)
- 2287 Post-release 2023.04.30 (2287) (@tardis-bot)
- 2286 Pre-release 2023.04.30 (2286) (@tardis-bot)
- 2284 Save LFS Objects
always()(2284) (@atharva-2001) - 2280 Prevent tests from running on forks (2280) (@atharva-2001)
- 2283 Post-release 2023.04.23 (2283) (@tardis-bot)
- 2282 Pre-release 2023.04.23 (2282) (@tardis-bot)
- 2121 adding nonhomologous_grid.py (2121) (@sonachitchyan)
- 2278 Post-release 2023.04.16 (2278) (@tardis-bot)
- 2277 Pre-release 2023.04.16 (2277) (@tardis-bot)
- 2267 Check MD5 sums of downloaded atom data (2267) (@epassaro)
- 2273 Fixes for update reference data workflow (2273) (@epassaro)
- 2275 Post-release 2023.04.09 (2275) (@tardis-bot)
- 2274 Pre-release 2023.04.09 (2274) (@tardis-bot)
- 2249 Port update reference data pipeline to GitHub Actions (2249) (@epassaro)
- 2233 Added documentation for parallel fixes for estimators (2233) (@1e9abhi1e10)
- 2250 Arepo mass average fix (2250) (@AlexHls)
- 2257 Post-release 2023.03.26 (2257) (@tardis-bot)
- 2247 Pre-release 2023.03.20 (2247) (@tardis-bot)
- 2246 Fix team reviewers on workflows (2246) (@epassaro)
- 2237 MonteCarlo packet progress bar completes to 100% (2237) (@shreyas3156)
- 2243 Fix for release dates (2243) (@epassaro)
- 2242 Fix for automerge (2242) (@epassaro)
- 2236 Docs Fix: Download Atom Data in rpacket_tracking.ipynb (2236) (@atharva-2001)
- 2204 Add docstrings to subpackages (2204) (@PommesFrittes)
- 2223 Post-release 2023.02.27 (2223) (@tardis-bot)
- 2222 Pre-release 2023.02.26 (2222) (@tardis-bot)
- 2214 Correct the description of 'no_of_packets' in Monte Carlo Configuration (2214) (@1e9abhi1e10)
- 2213 Post-release 2023.02.20 (2213) (@tardis-bot)
- 2194 Cache LFS objects in the tests workflow (2194) (@atharva-2001)
- 2208 Pre-release 2023.02.12 (2208) (@tardis-bot)
- 2190 Add version tag to simulation objects (2190) (@krimmskramms)
- 2206 Post-release 2023.02.06 (2206) (@tardis-bot)
- 2205 Pre-release 2023.02.05 (2205) (@tardis-bot)
- 2200 Fix config reader tests (2200) (@chvogl)
- 2195 Reading nlte_excitation_species from config (2195) (@sonachitchyan)
- 2198 Fixing test_store_runner_to_hdf (2198) (@sonachitchyan)
- 2185 Rename T variables to temperature (2185) (@1e9abhi1e10)
- 2171 Adding nlte solver (2171) (@sonachitchyan)
- 2187 Downloading nlte_atom_data in ref data (2187) (@sonachitchyan)
- 2188 Post-release 2023.01.11 (2188) (@tardis-bot)
- 2180 Pre-release 2022.12.25 (2180) (@tardis-bot)
- 2170 Add missing init.py files to transport and geometry subpackages (2170) (@epassaro)
- 2173 Post-release 2022.12.12 (2173) (@tardis-bot)
- 2172 Pre-release 2022.12.11 (2172) (@tardis-bot)
- 2150 Kilonova missing zeta (2150) (@gleck97)
- 2158 NLTE jacobian matrix (2158) (@sonachitchyan)
- 2154 Fixing typos for nlte ion (2154) (@sonachitchyan)
- 2159 Fix relativistic packet initialization (2159) (@chvogl)
- 2155 Pre-release 2022.11.17 (2155) (@tardis-bot)
- 2152 Set specific qgrid feedstock version (2152) (@andrewfullard)
- 2140 Adding nlte_rate_equation_solver.py (2140) (@sonachitchyan)
- 2147 Pin setuptools_scm to v6 (2147) (@epassaro)
- 2127 Possible fix for prerelease workflow (2127) (@andrewfullard)
- 2146 Add missing cell to download atom data (2146) (@epassaro)
- 2136 Restructuring NumbaModel (2136) (@satwik-kambham)
- 2132 Adding rate matrix index (2132) (@sonachitchyan)
- 2130 moved helium nlte to a seperate file
helium_nlte.py(2130) (@sonachitchyan) - 2124 Cleaning model state (2124) (@satwik-kambham)
- 2096 Small bug fix for He NLTE. (2096) (@)
- 1923 Fixing latex_label Parameter within write_to_tex function (1923) (@bartnikm)
- 2095 Removing outdated documentation and creating developer tools section (2095) (@isaacgsmith)
- 2099 Arbitrary isotope decay handling and positronium (2099) (@andrewfullard)
- 2118 Integrating experimental model state (2118) (@satwik-kambham)
- 2120 Update arepo docs notebook to be pre-run (2120) (@AlexHls)
- 2115 added docs for montecarlo packet visualization (2115) (@jayantbhakar)
- 2117 Runs cells in arepo notebook to avoid downloading files (2117) (@andrewfullard)
- 2103 New geometry class (2103) (@satwik-kambham)
- 2111 New TARDIS flowchart and cleaning up physics walkthrough (2111) (@isaacgsmith)
- 2098 New Composition Class (2098) (@satwik-kambham)
- 2108 Rework Estimators and Convergence Docs (2108) (@isaacgsmith)
- 2105 Documentation for Features In-Progress (2105) (@isaacgsmith)
- 2107 Added positronium notes (2107) (@andrewfullard)
- 2091 Added interaction type in rpacket_tracker (2091) (@jayantbhakar)
- 2110 removed scatter function from interaction.py (2110) (@sonachitchyan)
- 2106 Resturcture ABCs import from collections module (2106) (@blackbird7112)
- 2093 Fixing Docs Warnings (2093) (@isaacgsmith)
- 2073 rpacket_tracker returns dataframe (2073) (@jayantbhakar)
- 2104 Re-produced PR 1826 (2104) (@andrewfullard)
- 2097 Creating new docs building instructions (2097) (@isaacgsmith)
- 2088 Arepo docs fix (2088) (@AlexHls)
- 1941 Improved arepo parser (1941) (@AlexHls)
- 2026 Adding physics introduction to documentation (2026) (@isaacgsmith)
- 2084 Fix broken links in workflow files and goverance md (2084) (@blackbird7112)
- 2083 Moved
trace_packetto tardis tansport (2083) (@Rodot-) - 2082 Added documetation on how to compare environment before update (2082) (@jaladh-singhal)
- 2076 Modified Function Name in Config validator according to PEP8 (2076) (@blackbird7112)
- 2062 Remove yaml_load_config_file (2062) (@aman1971)
- 2052 Created a smart HDF Reader which can re-produce simulation object (2052) (@satwik-kambham)
- 2070 Pre-release 2022.06.26 (2070) (@tardis-bot)
- 2069 Wait for pull request creation (2069) (@epassaro)
- 2067 Begin geometry subfolder (2067) (@nolanbrown01)
- 2050 Update Jsonschema package to V4 (2050) (@blackbird7112)
- 2065 Continuing geometry restructure (2065) (@nolanbrown01)
- 2063 Initial geometry restructure (2063) (@nolanbrown01)
- 2061 Post-release 2022.06.19 (2061) (@tardis-bot)
- 2060 Pre-release 2022.06.19 (2060) (@tardis-bot)
- 2036 Restructure code to remove the single_packet_seed field (2036) (@blackbird7112)
- 2054 Auto-merge fixes (2054) (@epassaro)
- 2053 Change developer installation command (2053) (@epassaro)
- 2048 Disable profiling page build on pull requests (2048) (@epassaro)
- 2042 Polish up Quickstart guide (2042) (@epassaro)
- 2010 Enable automerge on pre and post-release workflows (2010) (@epassaro)
- 2046 Stop redirecting docs page (2046) (@epassaro)
- 2045 Add DOI badge to credits section (2045) (@epassaro)
- 2047 Ignore gamma-ray deposition notebook for now (2047) (@andrewfullard)
- 1698 Gamma ray propagation (1698) (@andrewfullard)
- 2044 Post-release 2022.06.05 (2044) (@tardis-bot)
- 2043 Pre-release 2022.06.05 (2043) (@tardis-bot)
- 2039 Check PEP8 on CI (2039) (@epassaro)
- 2037 Update README.rst in post-release (2037) (@epassaro)
- 2024 Added v_inner and v_outer, enable_nonhomologous_expansion for future use in nonhomologous expansion (2024) (@sonachitchyan)
- 2038 Fix bot aliases in .mailmap (2038) (@epassaro)
- 2027 Switch from
docstr-coveragepackage tointerrogatein CI pipelines (2027) (@epassaro) - 2020 Fixes for CITATION.cff (2020) (@epassaro)
- 2033 Merge all CI users on .mailmap (2033) (@epassaro)
- 2028 Rebuild installation page (2028) (@epassaro)
- 1921 Formal integral documentation (1921) (@isaacgsmith)
- 2030 Fix estimators parallel (2030) (@Rodot-)
- 2019 Added compatability to current version of carsus atomic data (2019) (@Rodot-)
- 2011 Build and cache conda environments with lockfiles (2011) (@epassaro)
- 1991 Re-write
download_from_urlusing Astropy'sdownload_file(1991) (@epassaro) - 1992 Fix low temperature problem of Van Regemorter approximation (1992) (@chvogl)
- 2018 Post-release 2022.05.08 (2018) (@tardis-bot)
- 2016 Pre-release 2022.05.08 (2016) (@tardis-bot)
- 1996 Fixes for compare-refdata pipeline (1996) (@epassaro)
- 2012 Fix post-release workflow automation (2012) (@epassaro)
- 2007 Use
pull_request_targettrigger in release workflow (2007) (@epassaro) - 2008 Move link_t_rad_t_electron to config file (2008) (@sonachitchyan)
- 2009 Revert "Removing Levels Index Variable Within Atomic Data Preperation" (2009) (@Rodot-)
- 2006 Post-release 2022.05.04 (2006) (@tardis-bot)
- 2005 Pre-release 2022.05.04 (2005) (@tardis-bot)
- 2003 Fix for isotope abundance parsing (2003) (@Rodot-)
- 1995 Force constant version date length (1995) (@epassaro)
- 1999 Create TARDIS release workflow (1999) (@epassaro)
- 2001 Post-release workflow (2001) (@epassaro)
- 2000 Make docs build in parallel (2000) (@isaacgsmith)
- 1998 Fix concurrency groups in workflows (1998) (@epassaro)
- 1987 Better documentation build workflow from 2021 GA Hackathon (1987) (@epassaro)
- 1989 Pre-release workflow (1989) (@epassaro)
- 1988 Use Azure mirror for reference data in testing pipeline (1988) (@epassaro)
- 1978 Plasma number densities using isotopes (1978) (@andrewfullard)
- 1985 Migrate testing pipeline to GitHub Actions (1985) (@epassaro)
- 1981 Better docstring coverage workflow from 2021 GA Hackathon (1981) (@epassaro)
- 1980 Check Black format on
masterbranch (1980) (@epassaro) - 1982 Add bot comment with directions to update .mailmap (1982) (@epassaro)
- 1973 Use spec file on Zenodo pipeline (1973) (@epassaro)
- 1983 Remove files already superseded by templates (1983) (@epassaro)
- 1977 Ignore more Black commits (1977) (@epassaro)
- 1971 Blackify TARDIS again (1971) (@epassaro)
- 1974 Add disclaimer to environment file regarding conda-forge recipe (1974) (@epassaro)
- 1970 Remove pull request bot comment workflow (1970) (@epassaro)
- 1969 Fix docs build after upgrading conda environment (1969) (@wkerzendorf)
- 1933 Intensity p rays (1933) (@Rodot-)
- 1948 Update TARDIS environment after replacing PyNE (1948) (@epassaro)
- 1957 Removing Levels Index Variable Within Atomic Data Preperation (1957) (@bartnikm)
- 1968 fixed index typo in Saha solver documentation (1968) (@afloers)
- 1959 Disable
mambaon Azure Pipelines (1959) (@epassaro) - 1967 Logging/csvy parsers errors (1967) (@wkerzendorf)
- 1813 Replacing PyNE with radioactivedecay for radionuclide decay calculations (1813) (@lemointm)
- 1925 Plasma Graph Tutorial (1925) (@bartnikm)
- 1899 Filtering Levels Parameter within Plasma Calculations (1899) (@bartnikm)
- 1920 Estimators and Convergence Documentation (1920) (@isaacgsmith)
- 1938 Pin Jinja version (1938) (@isaacgsmith)
- 1928 Fixing various physics documentation issues (1928) (@isaacgsmith)
- 1898 Making changes to estimators (1898) (@isaacgsmith)
- 1922 Fixing documentation links and misc. API documentation fixes (1922) (@isaacgsmith)
- 1919 GPU Options (1919) (@KevinCawley)
- 1918 Fix documentation build failure due to PR #1823 (1918) (@atharva-2001)
- 1917 Continuum Opacities (1917) (@Rodot-)
- 1823 Disable Convergence Plots by default (1823) (@atharva-2001)
- 1914 add continuum tracer (1914) (@wkerzendorf)
- 1886 Continuum branch [attempted merge with master] (1886) (@wkerzendorf)
- 1907 Add note on GPU selection to formal integral (1907) (@KevinCawley)
- 1710 Changed Formatting for the logger based on Log Level (1710) (@DhruvSondhi)
- 1901 Fix PyTest fixtures and updated mainloop to properly compile (1901) (@Rodot-)
- 1900 Make update-refdata pipeline open a PR instead of merging changes (1900) (@epassaro)
- 1837 CUDA Version of the Formal Integral (1837) (@KevinCawley)
- 1891 Fixing Broken Latex Code (1891) (@bartnikm)
- 1868 Fixing Plasma Graph to Allow .dot and .tex file Generation (1868) (@bartnikm)
- 1893 Fixing small docs issues (1893) (@isaacgsmith)
- 1888 Pin Black (1888) (@atharva-2001)
- 1881 Changed to append
seed&indexvalues only once for a particularRPacketTrackerinstance (1881) (@DhruvSondhi)
- 1877 printing packet information (1877) (@wkerzendorf)
- 1867 Arepo parser (1867) (@AlexHls)
- 1843 Changed Default Log Level to
INFOfor the Simulation Logging (1843) (@DhruvSondhi) - 1849 Interactive docs for models (1849) (@isaacgsmith)
- 1876 fixed outdated pytest tardis command in documentation (1876) (@afloers)
- 1874 move transport related parts to r_packet_transport (1874) (@wkerzendorf)
- 1872 Fix links in the code of conduct (1872) (@isaacgsmith)
- 1847 Add a ModelState class (1847) (@atharva-2001)
- 1865 Fixing links on contributing page (1865) (@isaacgsmith)
- 1866 Refactor
test_configuration_namespace.py(1866) (@atharva-2001) - 1861 Renamed
RPacketCollectionClass toRPacketTracker(1861) (@DhruvSondhi)
- 1827 Adding Explanations to Spectrum Configuration (1827) (@bartnikm)
- 1752 Add tests to SDEC plotter module (1752) (@jaladh-singhal)
- 1848 Switching progress bars page to rst (1848) (@isaacgsmith)
- 1846 Fix Virtual Packet Logging Bug (1846) (@atharva-2001)
- 1834 Adding Luminosity Integral Explanation to Supernova Configuration (1834) (@bartnikm)
- 1842 Fixed fstring issue from mixing quotes and reformatted files from fstring PR with black (1842) (@Rodot-)
- 1841 Fixed the Failing Documentation for Tracking
RPacketFeature (1841) (@DhruvSondhi)
- 1835 Reorganizing docs for website release (1835) (@isaacgsmith)
- 1748 Tracking RPacket Properties in Montecarlo Single Packet Loop Function (1748) (@DhruvSondhi)
- 1706 Changed to fstring (1706) (@svenkat19)
- 1833 Editing instructions for contributing to the documentation (1833) (@isaacgsmith)
- 1832 Convert quantities to arrays when plotting in SDEC plot (1832) (@atharva-2001)
- 1830 Name plotly traces in SDEC plot (1830) (@atharva-2001)
- 1825 changed all files to import constants from only tardis (1825) (@shilpiprd)
- 1799 Bug fixes and Improvements in Custom Abundance Widget (1799) (@yuyizheng1112)
- 1803 Option to make docs build in parallel (1803) (@isaacgsmith)
- 1817 Fixing SDEC docs page (1817) (@isaacgsmith)
- 1821 remove numexpr (1821) (@wkerzendorf)
- 1788 Add cmap option to specify the colormap of plot (1788) (@yuyizheng1112)
- 1801 Cleaning up docs build (1801) (@isaacgsmith)
- 1808 Fixing import for binder (1808) (@isaacgsmith)
- 1816 fix push job on update changelog workflow (1816) (@epassaro)
- 1811 Fixing broken documentation (1811) (@isaacgsmith)
- 1744 Basic Spectrum Generation Interactive Documentation (1744) (@isaacgsmith)
- 1810 Add option to add Observed Spectrum (2) (1810) (@atharva-2001)
- 1806 Pin
jsonschemato v3 (1806) (@atharva-2001) - 1805 Revert "Add option to add Observed Spectrum" (1805) (@)
- 1761 Add option to add Observed Spectrum (1761) (@atharva-2001)
- 1794 Change virtual spectrum spawn range start value to 1 (1794) (@atharva-2001)
- 1757 Auto-Generating Tutorials Page (1757) (@isaacgsmith)
- 1784 Restructure Custom Abundance Widget code (1784) (@yuyizheng1112)
- 1763 Making Changes to Several Tutorials (1763) (@isaacgsmith)
- 1790 disable changelog in release pipeline (1790) (@epassaro)
- 1769 Changed the way
specific_log_levelflag works in the Logging Configuration (1769) (@DhruvSondhi)
- 1789 fix zenodo pipeline (2nd) (1789) (@epassaro)
- 1787 fix zenodo pipeline env (1787) (@epassaro)
- 1786 fix for release task (1786) (@epassaro)
- 1703 Adding Progress Bars (1703) (@atharva-2001)
- 1775 orchestrating continuous delivery pipeline (1775) (@epassaro)
- 1751 Integrate custom abundance widget as a full module (1751) (@yuyizheng1112)
- 1778 Fix Hover Data in Plasma Convergence Plots (1778) (@atharva-2001)
- 1693 Enabling virtual_packet_logging by default in the visualization folder (1693) (@atharva-2001)
- 1770 Rename cplots to convergence_plots (1770) (@atharva-2001)
- 1772 Reverse legend in Plasma Convergence Plots (1772) (@atharva-2001)
- 1768 Renamed
specificlog flag tospecific_log_level(1768) (@DhruvSondhi) - 1721 Restructure Model Configuration Documentation (1721) (@isaacgsmith)
- 1753 Adding Convergence Plots to the Documentation (1753) (@atharva-2001)
- 1738 TARDIS Grid (1738) (@marxwillia)
- 1755 Changing Note Format in Visualization Notebooks (1755) (@isaacgsmith)
- 1740 Renamed
montecarlo_logger.pytomontecarlo_tracking.py(1740) (@DhruvSondhi)
- 1697 Interact Button in Documentation (1697) (@isaacgsmith)
- 1636 Adding Convergence Plots (1636) (@atharva-2001)
- 1723 Edit docstring in
run_tardis(1723) (@atharva-2001) - 1743 Fix for Unresponsive Main Page due to Twitter Widget (1743) (@atharva-2001)
- 1746 Fixing Docs Build (1746) (@isaacgsmith)
- 1730 Renamed
log_statetolog_levelfor setting the logging level in the Logger (1730) (@DhruvSondhi) - 1736 Fixing Doc Build Warnings (1736) (@isaacgsmith)
- 1737 Add Jaladh to mailmap (1737) (@jaladh-singhal)
- 1739 Fixed IPython Displaying the Plasma Stratification (Table) even when the Logger is turned Off (1739) (@DhruvSondhi)
- 1742 Reduce
damping_constantundert_innerproperty in tardis_example.yml (1742) (@atharva-2001)
- 1665 Demonstrating the
nelementsand thespecies_listfunctionality in the SDEC plot notebook (1665) (@marxwillia) - 1727 Fixing Quickstart Metadata (1727) (@isaacgsmith)
- 1726 display "latest" in doc version (1726) (@epassaro)
- 1716 Small fixes to docs (1716) (@isaacgsmith)
- 1722 Adding missing import for
IonNumberDensityHeNLTEinstandard_plasmas.py(1722) (@DhruvSondhi) - 1714 Removed Formatting from Existing Log Messages (1714) (@DhruvSondhi)
- 1707 Open in VSCode badge (1707) (@wkerzendorf)
- 1713 fix package data for conda-forge package (1713) (@epassaro)
- 1711 Changed the xlim and the ylabel (From PR #1646) (1711) (@Rodot-)
- 1686 fix pip install (1686) (@epassaro)
- 1701 Adding Logging Support for Caught Exceptions (1701) (@DhruvSondhi)
- 1684 Moved Simulation & Montecarlo Logging Frameworks to
tardis/io/loggerfolder (1684) (@DhruvSondhi) - 1691 Create profiling directory (1691) (@KevinCawley)
- 1680 add docstr-coverage badge (1680) (@epassaro)
- 1696 Adding mu and r to virtual packet logging (1696) (@isaacgsmith)
- 1695 Enabling spectrum plotting in the frequency domain (1695) (@isaacgsmith)
- 1688 final changes for release pipeline (1688) (@epassaro)
- 1683 prepare release pipeline for CalVer (1683) (@epassaro)
- 1674 APE 17 migration (1674) (@epassaro)
- 1658 add refdata repo selection in template (1658) (@epassaro)
- 1677 Revert "Port tardis_opacities script from tardisanalysis" (1677) (@andrewfullard)
- 1660 Small fixes to I/O documentation (1660) (@isaacgsmith)
- 1681 add latest black commit to .git-blame-ignore-revs (1681) (@epassaro)
- 1678 Enabling Repository on Binder (1678) (@isaacgsmith)
- 1679 Formatted files with Black (1679) (@DhruvSondhi)
- 1633 Implementing Logging Configuration for Notebook Logging (1633) (@DhruvSondhi)
- 1642 Adding Glossary (1642) (@J-Je0ng)
- 1580 Port tardis_opacities script from tardisanalysis (1580) (@MarkMageeAstro)
- 1664 use conda-forge packages instead of pypi (1664) (@epassaro)
- 1667 Moving Profiling Page (1667) (@isaacgsmith)
- 1659 Restructure Documentation pt. 2 (1659) (@isaacgsmith)
- 1656 Editing sponsors and credits pages of documentation (1656) (@isaacgsmith)
- 1597 add value error to ensure active virtual packet logging in SDECPlotter (1597) (@yuyizheng1112)
- 1630 Fix FileExistsError in to_hdf() (1630) (@yuyizheng1112)
- 1641 Editing Installation Page (1641) (@musabbihaz)
- 1657 Add SnakeViz profiling example (1657) (@KevinCawley)
- 1644 add mailmap check workflow (1644) (@epassaro)
- 1589 Adding Interactive Initialization Documentation (1589) (@isaacgsmith)
- 1627 Correct misspelling in sdec_plot (1627) (@yuyizheng1112)
- 1632 Formatting Logging Output for Simulation (1632) (@DhruvSondhi)
- 1652 changes to environment (1652) (@epassaro)
- 1650 Adding functionality to Detect Running Environments for TARDIS Simulations (1650) (@DhruvSondhi)
- 1615 add flag to disable nbsphinx (1615) (@epassaro)
- 1651 force orphan gh-pages branch (1651) (@epassaro)
- 1643 Restructure Documentation (1643) (@isaacgsmith)
- 1647 Fix for the v-packet logging while parallelism is enabled. (1647) (@Rodot-)
- 1645 configure codecov (1645) (@epassaro)
- 1586 add gh pages instruction (1586) (@epassaro)
- 1648 fix compareWith parameter in release pipeline (1648) (@epassaro)
- 1609 update refdata procedure docs (1609) (@epassaro)
- 1635 test before make a new release (1635) (@epassaro)
- 1617 Fixing
docstrings& indentation related warnings for Sphinx (1617) (@DhruvSondhi) - 1565 Fix for close line test. (1565) (@Rodot-)
- 1639 push montecarlo data to refdata repo (1639) (@epassaro)
- 1595 move zenodo pipeline to GA (1595) (@epassaro)
- 1623 force pyne nomoab_openmc version (1623) (@epassaro)
- 1622 Adding GitHub to sponsors page (1622) (@isaacgsmith)
- 1631 update mailmap and orcid (1631) (@epassaro)
- 1619 disable repeat on pr comment (1619) (@epassaro)
- 1555 Replacing the contents of the news section with TARDIS twitter feed (1555) (@atharva-2001)
- 1610 add token at checkout step (1610) (@epassaro)
- 1594 Fixing JSON Schema not Rendering Properly in the Documentation (1594) (@DhruvSondhi)
- 1607 SDEC Visibility Fix (1607) (@atharva-2001)
- 1603 Bot mail change (1603) (@epassaro)
- 1601 Fixing documentation build (1601) (@isaacgsmith)
- 1602 add fetch depth param to changelog workflow (1602) (@epassaro)
- 1588 Added PR review checklist workflow (1588) (@aribalam)
- 1592 Flexible packet initial radius (1592) (@andrewfullard)
- 1598 Resolving warnings in ADS notebook (1598) (@isaacgsmith)
- 1596 Fixing bibliography in documentation build (1596) (@isaacgsmith)
- 1590 Fixing inconsistencies for
rstformatting in Docs (Second Iteration) (1590) (@DhruvSondhi)
- 1570 add fetch depth param to Azure template (1570) (@epassaro)
- 1567 review environment file (1567) (@epassaro)
- 1584 Making sponsors page of documentation (1584) (@isaacgsmith)
- 1577 Fixing issues with
Citations&Labelreferences in Docs (1577) (@marxwillia) - 1581 changes to badges (1581) (@marxwillia)
- 1582 Fixing
TeamLink redirection in Code Of Conduct (1582) (@marxwillia)
- 1571 Fix numba deprecation (1571) (@KevinCawley)
- 1578 minor changes to compare refdata pipeline (1578) (@epassaro)
- 1557 Changed Quickstart Example according to #1477 (1557) (@aribalam)
- 1575 Fixing virtual_packet_logging instructions for line info widget (1575) (@DhruvSondhi)
- 1574 Revert "Adding Instructions For Enabling
virtual_packet_loggingProperties in Config" (1574) (@jaladh-singhal)
- 1559 Added support for passing Configuration object in run_tardis (1559) (@aribalam)
- 1553 Fixing RST Formatting for
config_validator.rst(1553) (@DhruvSondhi) - 1551 Adding Instructions For Enabling
virtual_packet_loggingProperties in Config (1551) (@DhruvSondhi) - 1528 Revising "Packet Propagation" page of physics docs (1528) (@isaacgsmith)
- 1569 Fixing docs build problem (1569) (@isaacgsmith)
- 1566 better handling of pickle5 backport (1566) (@epassaro)
- 1562 added symlinks for tardis_example.yml (1562) (@parikshit14)
- 1434 create update refdata pipeline (1434) (@epassaro)
- 1554 Adding Config Value Validation for Different Parameters via Config File (1554) (@DhruvSondhi)
- 1549 Numba formal integral (1549) (@Rodot-)
- 1546 Fixing Bad YAML output in the documentation (1546) (@atharva-2001)
- 1543 Restructuring r_packet.py (1543) (@andrewfullard)
- 1539 Add ion contributions to SDEC plotter (1539) (@MarkMageeAstro)
- 1531 Fixing SDEC labels bug in the documentation (1531) (@atharva-2001)
- 1450 string formatting done (try fixing all syntax errors) (1450) (@yashagg2001)
- 1493 Added workflow for Documentation preview generation (1493) (@aribalam)
- 1540 Fix version number in docs (1540) (@epassaro)
- 1538 clean template files (1538) (@epassaro)
- 1512 Improved default number of interpolate_shells for the formal integral (1512) (@chvogl)
- 1499 [WIP] Enable full tests for Formal Integral (1499) (@aribalam)
- 1530 Small fixes in git_workflow guide (1530) (@Molkree)
- 1535 Fix macOS tests (pickle protocol 5) (1535) (@epassaro)
- 1478 add the symlink to visualization examples (1478) (@yuyizheng1112)
- 1527 Fixing the documentation bug (1527) (@atharva-2001)
- 1526 enable manual trigger for docs (1526) (@epassaro)
- 1517 Add catch for missing elements in SDEC plot (1517) (@MarkMageeAstro)
- 1483 Corrected csvy model files (1483) (@antreev-brar)
- 1479 getting rid of lexsort warning (1479) (@atharva-2001)
- 1506 Add ability to plot only top contributing elements to SDEC plot (1506) (@MarkMageeAstro)
- 1509 Collisional ionization (1509) (@chvogl)
- 1477 Added option for keyword arguments in the TardisSpectrum's plot method (1477) (@aribalam)
- 1474 Docs Update (1474) (@ankur-soni97)
- 1498 Feature request: add virtual-packet-logging option to run_tardis() (1498) (@yuyizheng1112)
- 1502 Correct .coveragerc file (1502) (@yuyizheng1112)
- 1492 Fix docstring mistakes in #1145 (1492) (@chvogl)
- 1505 Fixing Visualization Notebook Hyperlink (1505) (@KevinCawley)
- 1481 Added Documentation for Parallel execution with Numba and OpenMP (1481) (@aribalam)
- 1145 Add photoionization-related rates (1145) (@chvogl)
- 1470 Incorporating old physics section of the documentation (1470) (@isaacgsmith)
- 1459 Removed the deprecated --with-vpacket-logging flag (1459) (@antreev-brar)
- 1462 Renamed widgets subpackage to visualization and restructured modules within it (1462) (@jaladh-singhal)
- 1464 Fixed the array types when interpolate_shells > 0. Now returns the p… (1464) (@Rodot-)
- 1454 Reorganizing Models (1454) (@isaacgsmith)
- 1458 Added option to create redirects in docs configuration and redirected gui to visualization (1458) (@jaladh-singhal)
- 1457 Reproduced SDEC plots in demo notebook (1457) (@marxwillia)
- 1446 Fixed italicised Units in sdec_plot (1446) (@DhruvSondhi)
- 1438 Add documentation for Spectral Element Decomposition Plot (1438) (@jaladh-singhal)
- 1455 Clean up numba parallelization warnings #1416 (1455) (@antreev-brar)
- 1442 Fixed distance parameter not producing accurate SDEC plots (1442) (@jaladh-singhal)
- 1432 fix update changelog workflow (1432) (@epassaro)
- 1441 Rename SEDec to SDEC in Spectral element DEComposition plot (1441) (@jaladh-singhal)
- 1430 compare refdata with arbitrary labels (1430) (@epassaro)
- 1431 Documentation guidelines hotfix (1431) (@KevinCawley)
- 1424 Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (1424) (@jaladh-singhal)
- 1409 add docstr-coverage workflow (1409) (@epassaro)
- 1405 Restructured development workflow and added code quality & documentation guidelines in it (1405) (@andrewfullard)
- 1421 Old physics reorganization (1421) (@andrewfullard)
- 1423 fixes for ci docs (1423) (@andrewfullard)
- 1420 Conversion of enlisted variable to int64 datatype (1420) (@andrewfullard)
- 1403 Fixing Hyperlinks in Documentation (1403) (@andrewfullard)
- 1410 Post reference data results (1410) (@andrewfullard)
- 1415 Add .log to gitignore, disabled montecarlo log (1415) (@andrewfullard)
- 1414 blackify tests (1414) (@andrewfullard)
- 1413 Corrected the Hyperlink reference (1413) (@andrewfullard)
- 1398 add black check workflow (1398) (@andrewfullard)
- 1399 fix tests with --generate-reference flag (1399) (@andrewfullard)
- 1393 Update environment file (1393) (@epassaro)
- 1404 added functionality for automatic date updation in docs (1404) (@andrewfullard)
- 1402 explicitly add parso to dependencies (1402) (@andrewfullard)
- 1241 Add modified Kromer plot to work with widgets (1241) (@marxwillia)
- 1395 Update Matterbridge docs (1395) (@epassaro)
- 1369 Fix incorrect docstrings (1369) (@KevinCawley)
- 1383 add preview docs section (1383) (@epassaro)
- 1392 Fix documentation build (1392) (@epassaro)
- 1394 Revert "Fixing docs building problem" (1394) (@andrewfullard)
- 1387 Fixing docs building problem (1387) (@isaacgsmith)
- 1380 Packet logging fixes for visualization (1380) (@andrewfullard)
- 1384 Small fixes for existing workflows (1384) (@epassaro)
- 1382 Fixing Quickstart Problem (1382) (@andrewfullard)
- 1379 Reorganizing files in docs (2/2) (1379) (@andrewfullard)
- 1378 Adding Plasma File in TOC (1378) (@andrewfullard)
- 1371 Reorganizing files in docs (1/2) (1371) (@andrewfullard)
- 1372 Update CI doc section (1372) (@epassaro)
- 1375 Fixed real packet logging of properties (1375) (@andrewfullard)
- 1354 Virtual packet logging fix (1354) (@andrewfullard)
- 1368 Fix of Issue #1176 (1368) (@andrewfullard)
- 1365 Parallel numba setup (1365) (@andrewfullard)
- 1331 Update changelog workflow (1331) (@andrewfullard)
- 1366 Fix duplicate appending of scalars in HDF writer and add an overwrite option (1366) (@andrewfullard)
- 1364 Fixing issue #1357 (1364) (@andrewfullard)
- 1359 Fix of Issue #680 (1359) (@KevinCawley)
- 1361 Fixing issue #1177 (1361) (@isaacgsmith)
- 1358 Fix C formal integral (1358) (@andrewfullard)
- 1352 Add Arjun's emails to .mailmap (1352) (@andrewfullard)
- 929 Numba montecarlo (929) (@wkerzendorf)
- 1353 fix doc workflow (1353) (@wkerzendorf)
- 1349 Adding documentation for research articles that used TARDIS (1349) (@andrewfullard)
- 1340 Moved staticmethods of line_info module to a dedicated plot_util module (1340) (@marxwillia)
- 1333 Rename testing pipeline (1333) (@epassaro)
- 1300 Remove pip install option from TARDIS installation docs (1300) (@jaladh-singhal)
- 1330 Small fix for release pipeline (1330) (@epassaro)
- 1332 Remove helper scripts (1332) (@epassaro)
- 1335 Updated gitignore to ignore auto-generated files (1335) (@jaladh-singhal)
- 1326 Add workflow for autodeploying documentation to github pages via an action (1326) (@morganlee123)
- 1283 Changed latex strings to raw strings (1283) (@Ak0303)
- 1310 Apply new template to refdata pipeline (1310) (@epassaro)
- 1308 Apply new template to release pipeline (1308) (@epassaro)
- 1313 Add Sponsor button to TARDIS (1313) (@jaladh-singhal)
- 1312 Add Matterbridge documentation (1312) (@epassaro)
- 1274 Add space to plasma error message (1274) (@marxwillia)
- 1280 Add widgets documentation to tardis docs (1280) (@marxwillia)
- 1299 Model configuration output in HDF (1299) (@andrewfullard)
- 1304 Use tardis-refdata from Azure mirror (CI/CD) (1304) (@epassaro)
- 1264 Add line info widget to widgets subpackage (1264) (@jaladh-singhal)
- 1296 Pin pyne to 0.7.0 (1296) (@andrewfullard)
- 1319 Numba montecarlo tests merged (1319) (@chvogl)
- 1318 Numba montecarlo profile1 (1318) (@Rodot-)
- 1317 Fixed
calculate_distance_lineshowing nu_diff < 0 (1317) (@Rodot-) - 1309 Re-add C formal integral (1309) (@chvogl)
- 1291 Download atom data from opensupernova mirror (1291) (@epassaro)
- 1254 Fix how virtual_packet properties are saved in hdf (1254) (@jaladh-singhal)
- 1278 Pin numpy to v1.19 (1278) (@epassaro)
- 1271 Move to NumPy 1.19 (1271) (@epassaro)
- 1266 Move to Pandas 1.x (1266) (@epassaro)
- 1235 test and fix for issue #1228 (1235) (@ebjordi)
- 1267 Temporarily fetch refdata from GDrive (1267) (@epassaro)
- 1265 add GIT_LFS_SMUDGE (1265) (@kaushik94)
- 1262 Update package versions (1262) (@epassaro)
- 1263 Clean up status badge display (1263) (@chvogl)
- 1261 Add governance document (1261) (@wkerzendorf)
- 1259 Emphasised reporting instructions in code of conduct (1259) (@harpolea)
- 1255 Pin pyne to v0.5 (1255) (@epassaro)
- 1213 Re-applied Black formatting to tardis after excluding undesired directories (1213) (@jaladh-singhal)
- 1210 [MRG] Using Mamba in Pipelines (1210) (@kaushik94)
- 1237 Add new Contribution guidelines (1237) (@jaladh-singhal)
- 1238 code of conduct symlink (1238) (@wkerzendorf)
- 1234 TARDIS Code of Conduct (1234) (@wkerzendorf)
- 1233 Update of the Governance model (1233) (@wkerzendorf)
- 1231 Roadmap Documentation Page (1231) (@marxwillia)
- 1227 Restore caching to spectrum_integrated (1227) (@arjunsavel)
- 1218 Move and rename coverage file (1218) (@arjunsavel)
- 1224 Added better mission statement (1224) (@ycamacho)
- 1190 Change
pytestconfigtorequest.config(1190) (@epassaro) - 1219 Update index.rst to add mission statement (1219) (@ycamacho)
- 1203 Minor changes to the environment file and cleanup (1203) (@epassaro)
- 1209 add sashank27 ORCID ID (1209) (@sashank27)
- 1207 add git-blame-ignore for code style black Changes (1207) (@wkerzendorf)
- 1201 Code style black (1201) (@wkerzendorf)
- 1200 Add jaladh-singhal's orcid to .orcid.csv (1200) (@jaladh-singhal)
- 1197 add arjun's name to the ORCID list (1197) (@arjunsavel)
- 1166 Create a new subpackage for jupyter-widgets and add shell info widgets (1166) (@jaladh-singhal)
- 1195 Fix badges in README.rst (1195) (@epassaro)
- 1193 Unpin astropy version (1193) (@epassaro)
- 1191 Add note to tell users which OS are supported (issue #1125) (1191) (@ebjordi)
- 1158 Make consistency edits to documentation (1158) (@arjunsavel)
- 1185 Upgrade pytest version (1185) (@epassaro)
- 1180 Remove test pipeline (1180) (@epassaro)
- 1153 update doc page to a notebook (1153) (@sashank27)
- 1150 Fix the Plasma tests (1150) (@wkerzendorf)
- 1178 Update mailmap (1178) (@epassaro)
- 1171 Print statement debug (1171) (@arjunsavel)
- 1165 Fix callbacks in run_tardis (1165) (@Rodot-)
- 1173 Fix GUI and plasma tests (1173) (@marxwillia)
- 1168 Add checkpoint to PR template checklist (1168) (@harpolea)
- 1162 Fix broken pipelines (1162) (@epassaro)
- 1159 Montecarlo/fix omp integrator (1159) (@Rodot-)
- 1155 CodeCov reintegration (1155) (@wkerzendorf)
- 1157 Update .mailmap (1157) (@epassaro)
- 1142 Split release pipeline (1142) (@epassaro)
- 1151 Git ignored VSCode specific files (1151) (@jaladh-singhal)
- 1149 Made plot size larger in quickstart notebook (1149) (@jaladh-singhal)
- 1147 allow downloading of example file in quickstart (1147) (@sashank27)
- 1105 Add skip condition if QT_API is no set (issue #1101) (1105) (@marxwillia)
- 1143 Set manual trigger on file (compare refdata) (1143) (@marxwillia)
- 1144 add option to execute quickstart in build (1144) (@sashank27)
- 1133 Solve pending issues of the release pipeline (1133) (@epassaro)
- 1141 fix warnings in quickstart (1141) (@sashank27)
- 1137 Increasing glob-like omission of coverage files (1137) (@arjunsavel)
- 1139 Added more file types to git ignore (1139) (@jaladh-singhal)
- 1134 Update mailmap (1134) (@orbitfold)
- 1135 Running tests on MacOS-10.14 (1135) (@orbitfold)
- 1285 Final numba PR (1285) (@arjunsavel)
- 1244 Fix numba_montecarlo virtual spectrum (1244) (@arjunsavel)
- 1136 Debugging relativity on numba_montecarlo (1136) (@arjunsavel)
- 1068 Migrate gui to PyQt5 (issue #988) (1068) (@ebjordi)
- 1085 Solves issue #680 for tardis.util.base (1085) (@marxwillia)
- 1055 renamed capmanager class functions to its new ones (1055) (@not4win)
- 1048 Re-activate TARDIS tests (1048) (@epassaro)
- 1046 Updated zenodo.json (1046) (@epassaro)
- 1045 Fix file paths at
diffstep in release pipeline (1045) (@epassaro) - 1040 Re-activate release job (1040) (@epassaro)
- 1039 Update .mailmap (1039) (@epassaro)
- 1031 Create Zenodo JSON file (1031) (@epassaro)
- 1036 Update zenodo.json (1036) (@epassaro)
- 1035 Update .mailmap (1035) (@epassaro)
- 1034 Update .mailmap (1034) (@epassaro)
- 1032 Add Mark Magee to .mailmap (1032) (@epassaro)
- 1025 Add
compilersto environment YAML file (1025) (@epassaro) - 1026 Minor changes to Azure release (1026) (@epassaro)
- 1027 Added Mark Magee (1027) (@MarkMageeAstro)
- 1024 Add epassaro orcid (1024) (@epassaro)
- 1022 Added my orcid (1022) (@harpolea)
- 1021 Set cron job, disable CI and PR (1021) (@epassaro)
- 1015 Set up release TARDIS version with Azure Pipelines (1015) (@epassaro)
- 1020 Update .mailmap (1020) (@livnehra)
- 1018 Updated .mailmap (1018) (@epassaro)
- 1010 Pipeline for comparing reference data (1010) (@epassaro)
- 1016 Removed GH Action for release versions (1016) (@epassaro)
- 1013 Fixed typo in GH Action (1013) (@epassaro)
- 1006 Trying to get the right version number for automatic release (1006) (@epassaro)
- 1008 Improvements for the update_reference section [docs] (1008) (@epassaro)
- 1011 Gui fix (1011) (@marxwillia)
- 1009 Fix for packet source unit test (1009) (@epassaro)
- 1007 Fix for vboundary tests (1007) (@epassaro)
- 995 Checking failing tests on Azure (995) (@kaushik94)
- 1005 Automatic TARDIS releases (1005) (@epassaro)
- 1004 Fixed csvy abundance indexing bug (1004) (@marxwillia)
- 1003 Custom source packets (1003) (@marxwillia)
- 994 Large cleanup operation (994) (@wkerzendorf)
- 992 Changes made to documentation for update_refdata (992) (@kowal180)
- 967 log additional properties in hdf witeout when --with-vpacket-logging is present (967) (@kaushik94)
- 969 Fixes numpydoc for util (969) (@kowal180)
- 985 Fix typo (985) (@jreichenbach-msu)
- 983 Fix installation documentation (983) (@jreichenbach-msu)
- 982 Pinned
numpyto v1.15 (982) (@epassaro) - 978 Add further fix to quickstart link (978) (@jreichenbach-msu)
- 975 Add links to Quickstart (975) (@jreichenbach-msu)
- 971 Fix formal integral spikes bug (971) (@chvogl)
- 968 Fixed GUI #950 tardis/gui/widgets.py (968) (@marxwillia)
- 965 Isotope time0 (965) (@marxwillia)
- 966 fix AtomData repr (966) (@wkerzendorf)
- 964 Raise error if requested atoms are not in the atomic data (964) (@chvogl)
- 959 Csvy model config dict (959) (@marxwillia)
- 960 Save integrated spectrum to hdf if requested (960) (@chvogl)
- 957 add blondin converter (957) (@wkerzendorf)
- 956 Dilution factor fix (956) (@marxwillia)
- 953 add code comparison (953) (@wkerzendorf)
- 952 Base schema fix (952) (@marxwillia)
- 951 Documentation restructure (951) (@wkerzendorf)
- 936 csvy_model (936) (@wkerzendorf)
- 945 Revert "Remove PR Trigger" (945) (@wkerzendorf)
- 928 Added csvy parser (928) (@marxwillia)
- 933 Radiative recombination (933) (@chvogl)
- 930 Fix for conda-forge package (930) (@epassaro)
- 918 Density docs (918) (@marxwillia)
- 926 Adding a TARDIS data repo (926) (@wkerzendorf)
- 924 Migrate beta_sobolev calculation from cython to numba (924) (@chvogl)
- 925 Docs/fix changelog (925) (@wkerzendorf)
- 923 Fix nlte normalization (923) (@wkerzendorf)
- 831 Fix NLTE Normalization - issue #784 (831) (@livnehra)
- 922 Revert "Fix nlte normalization " (922) (@wkerzendorf)
- 920 Fix nlte normalization (920) (@wkerzendorf)
- 921 Autoupdate changelog (921) (@wkerzendorf)
- 919 Add possibility to bias vpacket emission based on optical depth (919) (@chvogl)
- 914 make GUI python3 compatible (914) (@wkerzendorf)
- 902 general overhaul of the docs for 3.0 (902) (@wkerzendorf)
- 916 fix the documenation up a bit (916) (@wkerzendorf)
- 915 Parsing STELLA files for TARDIS (915) (@sarafina325)
- 911 Use Russian roulette to kill v-packets with negligible weight (911) (@chvogl)
- 697 Relativity (697) (@chvogl)
- 901 .nojekyll added to docs (901) (@debajyotidasgupta)
- 897 add pytest azurepipelines (897) (@wkerzendorf)
- 896 Adding general build artefacts (896) (@wkerzendorf)
- 894 Azure pipeline for TARDIS (894) (@wkerzendorf)
- 893 add doctr to TARDIS (893) (@wkerzendorf)
- 892 adding azure-pipelines (892) (@wkerzendorf)
- 891 New template setup from astropy (891) (@wkerzendorf)
- 888 Update installation.rst (888) (@nileshpatra)
- 886 Pandas ix fix (886) (@wkerzendorf)
- 879 Python3 version of TARDIS (879) (@wkerzendorf)
- 881 Adds description of gcc problem to documentation (881) (@ycamacho)
- 859 Use interpolated values to do formal integral with more shells (859) (@chvogl)
- 873 Some small fixes related to the documentation and the building process (Fix #842) (873) (@unoebauer)
- 868 Add Travis Stages: Activate Integration tests (868) (@unoebauer)
- 866 Add Travis Caching and separate scripts for CI (866) (@wkerzendorf)
- 869 Travis update2 (869) (@wkerzendorf)
- 864 Unify unittest hdfs (864) (@unoebauer)
- 865 Adding CodeCov integration (865) (@wkerzendorf)
- 860 Enabling the addition of callbacks in run_tardis (860) (@wkerzendorf)
- 863 Thomson cross section: Continuation of PR #688 (863) (@unoebauer)
- 850 Add full test for formal integral method (850) (@unoebauer)
- 861 Describe refdata update and workflow refactor (861) (@wkerzendorf)
- 848 Add capability to store information about the plasma state during iterations (848) (@unoebauer)
- 857 Refactor logging (857) (@wkerzendorf)
- 856 Extend formal integral to line_interaction_type macroatom (856) (@chvogl)
- 855 Make the conda-forge channel the only channel (855) (@wkerzendorf)
- 853 Fix formal integral (853) (@chvogl)
- 849 Missing refdata (849) (@wkerzendorf)
- 851 add atomic data description (851) (@wkerzendorf)
- 846 update the OPENMP text to be correct (846) (@wkerzendorf)
- 847 Revert "change to new cython version" (847) (@wkerzendorf)
- 839 change to new cython version (839) (@wkerzendorf)
- 845 Update Documentation: new location of tardis_example (845) (@unoebauer)
- 843 Fix issue with custom_composition reader (843) (@unoebauer)
- 844 Remove bbsampling from schema file (844) (@pfreddy)
- 837 Add json sphinx (837) (@wkerzendorf)
- 841 Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (841) (@Heringer-Epson)
- 838 fix current cython installation problem (838) (@wkerzendorf)
- 821 Simplify convergence strategies (821) (@unoebauer)
- 833 restructure landing page to use notebooks (833) (@wkerzendorf)
- 832 Fixes #830 (832) (@unoebauer)
- 829 build bleeding edge cython (829) (@wkerzendorf)
- 828 trying to get travis to build (828) (@wkerzendorf)
- 827 Update travis link to miniconda (827) (@unoebauer)
- 826 Remove tardis_example.tar.gz from documentation; fixes #824 (826) (@unoebauer)
- 820 update of mailmap (820) (@wkerzendorf)
- 819 Reintroduce and update changelog (819) (@unoebauer)
- 815 Update and Fix Documentation (815) (@unoebauer)
- 816 Remove old and broken badges (816) (@unoebauer)
- 814 Fix numpydoc problem (814) (@unoebauer)
- 813 Request specific sphinx version (813) (@unoebauer)
- 812 Update of documentation (812) (@unoebauer)
- 809 fix dependencies for tardis conda env (809) (@wkerzendorf)
- 761 Add caching for integrated spectrum: Fix #760 (761) (@wkerzendorf)
- 715 Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (715) (@wkerzendorf)
- 801 Decay of isotopes branch (801) (@wkerzendorf)
- 806 Fix reference dictionary problem (806) (@wkerzendorf)
- 802 Fix for PR #801 (802) (@wkerzendorf)
- 772 [TEP007] CMFGEN density parser (772) (@wkerzendorf)
- 771 [TEP007] Add cmfgen2tardis script (771) (@wkerzendorf)
- 757 [TEP007] Decay and merge isotopic abundance dataframe (757) (@wkerzendorf)
- 767 [TEP007] Docs for isotope config (767) (@wkerzendorf)
- 764 [TEP007] Isotope stratified file support (764) (@wkerzendorf)
- 762 [TEP007] Isotope uniform config option (762) (@wkerzendorf)
- 756 [TEP007] [WIP] Isotope Abundances class (756) (@wkerzendorf)
- 803 include yml files in MANIFEST (803) (@wkerzendorf)
- 799 tardis/plasma/standard_plasmas.py: old database files warning (799) (@wkerzendorf)
- 797 Minor Updates: Fixes for #521 and #699 (797) (@wkerzendorf)
- 796 Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (796) (@wkerzendorf)
- 795 Force deactivate LaTeX in GUI - Fix #441 (795) (@wkerzendorf)
- 793 Add pyside to requirements (needed for GUI) (793) (@wkerzendorf)
- 794 add new readthedocs.yml (794) (@wkerzendorf)
- 792 Fix compatibility with networkx 2.0 (792) (@wkerzendorf)
- 791 Propagate changes to the line index into the GUI code (791) (@wkerzendorf)
- 786 The final carsus merge (786) (@wkerzendorf)
- 782 Plasma write_to_tex/dot unit tests (782) (@wkerzendorf)
- 781 Omit coverage of test related files (781) (@wkerzendorf)
- 785 [DOC] Update Running tests doc (785) (@wkerzendorf)
- 774 Replace Comparison values in Plasma Unit Tests with reference HDF file (774) (@wkerzendorf)
- 780 LevelBoltzmannFactorNLTE.from_config is now a staticmethod (780) (@wkerzendorf)
- 778 Fix NLTE (778) (@wkerzendorf)
- 776 Fix compatibility bug in radiative_properties (776) (@wkerzendorf)
- 779 Save coverage report when tests use tardis-refdata (779) (@wkerzendorf)
- 775 Transition from atomic-dataset config option to tardis-refdata (775) (@wkerzendorf)
- 769 [TEP014] [DOC] Updated to_hdf notebook (769) (@wkerzendorf)
- 759 Formal Integral: including electron scattering (759) (@wkerzendorf)
- 768 [TEP014] Simulation HDF and deprecated to_hdf cleanup. (768) (@wkerzendorf)
- 773 Update Documentation (773) (@wkerzendorf)
- 752 [TEP014] PlasmaWriterMixin (752) (@wkerzendorf)
- 748 [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (748) (@wkerzendorf)
- 765 Attempt to fix up the GUI (765) (@wkerzendorf)
- 758 Add new version to tardis_env27 and add pyne (758) (@wkerzendorf)
- 753 [TEP014][DOC] HDFWriter Documentation (753) (@wkerzendorf)
- 740 [GSoC] Formal integral Project (740) (@wkerzendorf)
- 750 [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (750) (@wkerzendorf)
- 745 [TEP005][DOC] Documentation (745) (@wkerzendorf)
- 746 [TEP005][CONFIG] Prevent incompatible configurations (746) (@wkerzendorf)
- 741 Add unit tests for the formal integral (741) (@wkerzendorf)
- 747 [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (747) (@wkerzendorf)
- 749 [TEP014] Change name of HDFWriter to HDFWriterMixin (749) (@wkerzendorf)
- 751 [QOL] Add default axis to TARDISSpectrum.plot (751) (@wkerzendorf)
- 743 Fix bug in plasma (743) (@wkerzendorf)
- 744 [TEP014] Added HDFWriter class + Unit Tests (744) (@wkerzendorf)
- 742 Fix clash in RTD dependencies (742) (@wkerzendorf)
- 735 Move common ctest fixtures into conftest.py (735) (@wkerzendorf)
- 729 Refactor spectrum (729) (@wkerzendorf)
- 730 Fix test_plasma_simple not skipping properly (730) (@wkerzendorf)
- 712 Colorize Logger (712) (@wkerzendorf)
- 718 Unit test for untested method of montecarlo simulation code (718) (@unoebauer)
- 724 Rebase PR #678 (724) (@wkerzendorf)
- 709 Add note about broken GUI to docu (709) (@wkerzendorf)
- 708 Add new installation instructions (708) (@wkerzendorf)
- 704 Fix ignoring model tests (704) (@wkerzendorf)
- 700 Add contributing guidelines (700) (@wkerzendorf)
- 686 converted spectrum_frequency (686) (@wkerzendorf)
- 696 Add missing diagnostics property to runner's to_hdf list (696) (@wkerzendorf)
- 694 Significantly reduce peak memory usage when vpacket logging is enabled (694) (@wkerzendorf)
- 682 Import montecarlo.base in the init module of the package. (682) (@wkerzendorf)
- 670 Integrate continuum interactions into cmontecarlo (670) (@wkerzendorf)
- 652 [TEP006] Aggregate TARDIS restructure and configuration system cleanup (652) (@wkerzendorf)
- 677 Update link to tardis_example.yml in documentation - Fix #676 (677) (@wkerzendorf)
- 674 Change matplotlib backend - fix test_integration remote plotting issue (674) (@yeganer)
- 664 Kd final test (664) (@wkerzendorf)
- 668 change to tardis atom data on git lfs (668) (@wkerzendorf)
- 666 Remove News from main TARDIS github page (666) (@wkerzendorf)
- 667 Update SOCIS and GSOC students credits (667) (@wkerzendorf)
- 665 Add to_hdf compression (665) (@wkerzendorf)
- 663 Develop (663) (@wkerzendorf)
- 507 Unit tests for untested methods of tardis/util.py (507) (@)
- 657 Require pyyaml 3.12 (657) (@wkerzendorf)
- 659 Update installation docs (659) (@wkerzendorf)
- 653 Facility to provide per-setup atom data as well as save report locally. (653) (@wkerzendorf)
- 641 Fix detailed radiative rates (641) (@wkerzendorf)
- 642 Use pytest-html==1.10.0, modify DokuReport class accordingly. (642) (@wkerzendorf)
- 630 Create an overview page on Dokuwiki. (630) (@yeganer)
- 620 Runner script to automate execution of integration tests. (620) (@wkerzendorf)
- 628 Remove exponent property from yaml files with exponential density (628) (@wkerzendorf)
- 626 Revert "Add exponent as a property for exponential density" (626) (@wkerzendorf)
- 542 Updates to He NLTE treatment. (542) (@wkerzendorf)
- 612 Add facility to generate and accept HDF files as reference data for Integration Tests. (612) (@wkerzendorf)
- 614 Omit the integration_tests when running coveralls (614) (@wkerzendorf)
- 619 Fixed incorrect name in error message (619) (@wkerzendorf)
- 618 to_hdf: If only the last run is stored, do not add a counter in the name (618) (@wkerzendorf)
- 617 Add a to_hdf method on TARDISSpectrum (617) (@wkerzendorf)
- 600 Parametrize the Slow Test class with two setups. (600) (@wkerzendorf)
- 613 Fix bug in montecarlo.pyx (613) (@wkerzendorf)
- 595 Line absorption rate estimator (595) (@wkerzendorf)
- 606 Merge to_hdf (606) (@wkerzendorf)
- 597 Use abundances, densities filepaths relative to w7 config file. (597) (@wkerzendorf)
- 569 Added a conda environment for tardis (569) (@wkerzendorf)
- 565 Change the way AtomData quantities are initialized (565) (@wkerzendorf)
- 599 Update the tardis_example tar file provided in the documentation. (599) (@wkerzendorf)
- 598 Fix convergence handling in run_legacy_simulation - fix issue #593 (598) (@wkerzendorf)
- 590 Link images of comparison plots in DokuReport using hookwrapper. (590) (@wkerzendorf)
- 591 Fix path of CSS and JS files used in html report. (591) (@wkerzendorf)
- 594 Provide tardis.yaml_load shortcut (594) (@wkerzendorf)
- 592 Fix virt energy (592) (@wkerzendorf)
- 583 Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload. (583) (@yeganer)
- 588 Embed comparison plots in Dokuwiki Report. (588) (@)
- 587 Move the three spectra attributes from Radial1DModel to MontecarloRunner (587) (@wkerzendorf)
- 578 Shift slow test related pytest hooks in lower level conftest.py (578) (@)
- 581 Update several files to match package_template (581) (@yeganer)
- 576 [config-system] Validator rewrite: Use jsonschema (576) (@wkerzendorf)
- 549 [TEP006] Create a JSON schema in YAML to replace the old tardis_config_definition.yml (549) (@ftsamis)
- 575 Replace misused calls to yaml.load with a helper function. (575) (@wkerzendorf)
- 570 Enable generation of html report of integration tests, and upload to dokuwiki. (570) (@wkerzendorf)
- 574 tardis/base.py: Remove duplicate code from run_tardis (574) (@wkerzendorf)
- 573 io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (573) (@wkerzendorf)
- 572 Change the way YAMLLoader resolves some properties (572) (@wkerzendorf)
- 532 Documentation overhaul (532) (@wkerzendorf)
- 571 [config] Set the exponent property as mandatory when density is exponential (571) (@ftsamis)
- 566 Initial laydown of comparison plots for TestW7. (566) (@)
- 567 Accept keyword arguments for Configuration.from_yaml (567) (@wkerzendorf)
- 561 TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (561) (@wkerzendorf)
- 515 [config-system] Add a custom YAML Loader to parse astropy quantities (515) (@wkerzendorf)
- 555 Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (555) (@wkerzendorf)
- 558 Integration Test class for Stratified W7 setup. (558) (@wkerzendorf)
- 557 Enable skipping slow tests. (557) (@unoebauer)
- 544 Continue cmontecarlo tests refactor. Extend #530. (544) (@unoebauer)
- 543 Fix issue #535: Treat rel. paths inside config relative to the config file (543) (@wkerzendorf)
- 551 Add SOCIS 2016 advertisement (551) (@wkerzendorf)
- 547 Fix Issue #548 (547) (@wkerzendorf)
- 545 added mailmap to compile the commits for each person (545) (@wkerzendorf)
- 539 Adding OSX to our travis build (539) (@wkerzendorf)
- 541 Move progress bar update after calculation (541) (@yeganer)
- 540 Mirroring C enums in Python for CMontecarlo tests. (540) (@yeganer)
- 538 Upgrading to the new Readthedocs infrastructure (538) (@wkerzendorf)
- 530 Refactor cmontecarlo tests for exercising parametrization. (530) (@yeganer)
- 537 Ignore invalid OpenMP nthreads values (537) (@yeganer)
- 527 Unit tests for untested methods of tardis/atomic.py (527) (@)
- 533 Remove rpacket.recently_crossed_boundary flag (533) (@wkerzendorf)
- 514 Performance (514) (@wkerzendorf)
- 531 Organize headers in C-Extension (531) (@wkerzendorf)
- 526 Docs: Include conda-requirements in installation.rst (526) (@ssim)