|
12 | 12 | Optimizing roc_auc |
13 | 13 | Initial best: 0.73008 |
14 | 14 | i Fold1, Repeat1: preprocessor 1/1 |
15 | | - v Fold1, Repeat1: preprocessor 1/1 |
16 | 15 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 |
17 | | - v Fold1, Repeat1: preprocessor 1/1, model 1/1 |
18 | | - i Fold1, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
19 | 16 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
20 | 17 | i Fold2, Repeat1: preprocessor 1/1 |
21 | | - v Fold2, Repeat1: preprocessor 1/1 |
22 | 18 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 |
23 | | - v Fold2, Repeat1: preprocessor 1/1, model 1/1 |
24 | | - i Fold2, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
25 | 19 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
26 | 20 | i Fold3, Repeat1: preprocessor 1/1 |
27 | | - v Fold3, Repeat1: preprocessor 1/1 |
28 | 21 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 |
29 | | - v Fold3, Repeat1: preprocessor 1/1, model 1/1 |
30 | | - i Fold3, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
31 | 22 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
32 | 23 | i Fold1, Repeat2: preprocessor 1/1 |
33 | | - v Fold1, Repeat2: preprocessor 1/1 |
34 | 24 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 |
35 | | - v Fold1, Repeat2: preprocessor 1/1, model 1/1 |
36 | | - i Fold1, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
37 | 25 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
38 | 26 | i Fold2, Repeat2: preprocessor 1/1 |
39 | | - v Fold2, Repeat2: preprocessor 1/1 |
40 | 27 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 |
41 | | - v Fold2, Repeat2: preprocessor 1/1, model 1/1 |
42 | | - i Fold2, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
43 | 28 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
44 | 29 | i Fold3, Repeat2: preprocessor 1/1 |
45 | | - v Fold3, Repeat2: preprocessor 1/1 |
46 | 30 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 |
47 | | - v Fold3, Repeat2: preprocessor 1/1, model 1/1 |
48 | | - i Fold3, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
49 | 31 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
50 | | - 1 ( ) accept suboptimal roc_auc=0.72145 (+/-0.003605) |
| 32 | + 1 <3 new best roc_auc=0.74036 (+/-0.002433) |
51 | 33 | i Fold1, Repeat1: preprocessor 1/1 |
52 | | - v Fold1, Repeat1: preprocessor 1/1 |
53 | 34 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 |
54 | | - v Fold1, Repeat1: preprocessor 1/1, model 1/1 |
55 | | - i Fold1, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
56 | 35 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
57 | 36 | i Fold2, Repeat1: preprocessor 1/1 |
58 | | - v Fold2, Repeat1: preprocessor 1/1 |
59 | 37 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 |
60 | | - v Fold2, Repeat1: preprocessor 1/1, model 1/1 |
61 | | - i Fold2, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
62 | 38 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
63 | 39 | i Fold3, Repeat1: preprocessor 1/1 |
64 | | - v Fold3, Repeat1: preprocessor 1/1 |
65 | 40 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 |
66 | | - v Fold3, Repeat1: preprocessor 1/1, model 1/1 |
67 | | - i Fold3, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
68 | 41 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
69 | 42 | i Fold1, Repeat2: preprocessor 1/1 |
70 | | - v Fold1, Repeat2: preprocessor 1/1 |
71 | 43 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 |
72 | | - v Fold1, Repeat2: preprocessor 1/1, model 1/1 |
73 | | - i Fold1, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
74 | 44 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
75 | 45 | i Fold2, Repeat2: preprocessor 1/1 |
76 | | - v Fold2, Repeat2: preprocessor 1/1 |
77 | 46 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 |
78 | | - v Fold2, Repeat2: preprocessor 1/1, model 1/1 |
79 | | - i Fold2, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
80 | 47 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
81 | 48 | i Fold3, Repeat2: preprocessor 1/1 |
82 | | - v Fold3, Repeat2: preprocessor 1/1 |
83 | 49 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 |
84 | | - v Fold3, Repeat2: preprocessor 1/1, model 1/1 |
85 | | - i Fold3, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
86 | 50 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
87 | | - 2 <3 new best roc_auc=0.73173 (+/-0.003018) |
| 51 | + 2 ( ) accept suboptimal roc_auc=0.73543 (+/-0.009624) |
88 | 52 |
|
89 | 53 | # variable interface |
90 | 54 |
|
|
100 | 64 | Optimizing roc_auc |
101 | 65 | Initial best: 0.73008 |
102 | 66 | i Fold1, Repeat1: preprocessor 1/1 |
103 | | - v Fold1, Repeat1: preprocessor 1/1 |
104 | 67 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 |
105 | | - v Fold1, Repeat1: preprocessor 1/1, model 1/1 |
106 | | - i Fold1, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
107 | 68 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
108 | 69 | i Fold2, Repeat1: preprocessor 1/1 |
109 | | - v Fold2, Repeat1: preprocessor 1/1 |
110 | 70 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 |
111 | | - v Fold2, Repeat1: preprocessor 1/1, model 1/1 |
112 | | - i Fold2, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
113 | 71 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
114 | 72 | i Fold3, Repeat1: preprocessor 1/1 |
115 | | - v Fold3, Repeat1: preprocessor 1/1 |
116 | 73 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 |
117 | | - v Fold3, Repeat1: preprocessor 1/1, model 1/1 |
118 | | - i Fold3, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
119 | 74 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
120 | 75 | i Fold1, Repeat2: preprocessor 1/1 |
121 | | - v Fold1, Repeat2: preprocessor 1/1 |
122 | 76 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 |
123 | | - v Fold1, Repeat2: preprocessor 1/1, model 1/1 |
124 | | - i Fold1, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
125 | 77 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
126 | 78 | i Fold2, Repeat2: preprocessor 1/1 |
127 | | - v Fold2, Repeat2: preprocessor 1/1 |
128 | 79 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 |
129 | | - v Fold2, Repeat2: preprocessor 1/1, model 1/1 |
130 | | - i Fold2, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
131 | 80 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
132 | 81 | i Fold3, Repeat2: preprocessor 1/1 |
133 | | - v Fold3, Repeat2: preprocessor 1/1 |
134 | 82 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 |
135 | | - v Fold3, Repeat2: preprocessor 1/1, model 1/1 |
136 | | - i Fold3, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
137 | 83 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
138 | | - 1 ( ) accept suboptimal roc_auc=0.72145 (+/-0.003605) |
| 84 | + 1 <3 new best roc_auc=0.74036 (+/-0.002433) |
139 | 85 | i Fold1, Repeat1: preprocessor 1/1 |
140 | | - v Fold1, Repeat1: preprocessor 1/1 |
141 | 86 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 |
142 | | - v Fold1, Repeat1: preprocessor 1/1, model 1/1 |
143 | | - i Fold1, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
144 | 87 | i Fold1, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
145 | 88 | i Fold2, Repeat1: preprocessor 1/1 |
146 | | - v Fold2, Repeat1: preprocessor 1/1 |
147 | 89 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 |
148 | | - v Fold2, Repeat1: preprocessor 1/1, model 1/1 |
149 | | - i Fold2, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
150 | 90 | i Fold2, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
151 | 91 | i Fold3, Repeat1: preprocessor 1/1 |
152 | | - v Fold3, Repeat1: preprocessor 1/1 |
153 | 92 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 |
154 | | - v Fold3, Repeat1: preprocessor 1/1, model 1/1 |
155 | | - i Fold3, Repeat1: preprocessor 1/1, model 1/1 (extracts) |
156 | 93 | i Fold3, Repeat1: preprocessor 1/1, model 1/1 (predictions) |
157 | 94 | i Fold1, Repeat2: preprocessor 1/1 |
158 | | - v Fold1, Repeat2: preprocessor 1/1 |
159 | 95 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 |
160 | | - v Fold1, Repeat2: preprocessor 1/1, model 1/1 |
161 | | - i Fold1, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
162 | 96 | i Fold1, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
163 | 97 | i Fold2, Repeat2: preprocessor 1/1 |
164 | | - v Fold2, Repeat2: preprocessor 1/1 |
165 | 98 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 |
166 | | - v Fold2, Repeat2: preprocessor 1/1, model 1/1 |
167 | | - i Fold2, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
168 | 99 | i Fold2, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
169 | 100 | i Fold3, Repeat2: preprocessor 1/1 |
170 | | - v Fold3, Repeat2: preprocessor 1/1 |
171 | 101 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 |
172 | | - v Fold3, Repeat2: preprocessor 1/1, model 1/1 |
173 | | - i Fold3, Repeat2: preprocessor 1/1, model 1/1 (extracts) |
174 | 102 | i Fold3, Repeat2: preprocessor 1/1, model 1/1 (predictions) |
175 | | - 2 <3 new best roc_auc=0.73173 (+/-0.003018) |
| 103 | + 2 ( ) accept suboptimal roc_auc=0.73543 (+/-0.009624) |
176 | 104 |
|
177 | 105 | --- |
178 | 106 |
|
|
183 | 111 | Message |
184 | 112 | There were 2 previous iterations |
185 | 113 | Optimizing roc_auc |
186 | | - 2 v initial roc_auc=0.73173 (+/-0.003018) |
187 | | - 3 <3 new best roc_auc=0.74172 (+/-0.008775) |
188 | | - 4 <3 new best roc_auc=0.7909 (+/-0.009887) |
| 114 | + 2 v initial roc_auc=0.74036 (+/-0.002433) |
| 115 | + 3 <3 new best roc_auc=0.75103 (+/-0.009282) |
| 116 | + 4 <3 new best roc_auc=0.76617 (+/-0.01037) |
189 | 117 |
|
190 | 118 | --- |
191 | 119 |
|
|
205 | 133 | set.seed(40) |
206 | 134 | rf_res_finetune <- tune_sim_anneal(wf_rf, resamples = bt, initial = rf_res) |
207 | 135 | Message |
208 | | - i Creating pre-processing data to finalize unknown parameter: mtry |
| 136 | + i Creating pre-processing data to finalize 1 unknown parameter: "mtry" |
209 | 137 | Optimizing roc_auc |
210 | | - Initial best: 0.84994 |
211 | | - 1 ( ) accept suboptimal roc_auc=0.84375 (+/-0.007727) |
212 | | - 2 + better suboptimal roc_auc=0.84943 (+/-0.007036) |
213 | | - 3 ( ) accept suboptimal roc_auc=0.84371 (+/-0.007903) |
214 | | - 4 + better suboptimal roc_auc=0.84825 (+/-0.008036) |
215 | | - 5 ( ) accept suboptimal roc_auc=0.84479 (+/-0.00814) |
216 | | - 6 + better suboptimal roc_auc=0.84816 (+/-0.007283) |
217 | | - 7 ( ) accept suboptimal roc_auc=0.84381 (+/-0.007999) |
218 | | - 8 <3 new best roc_auc=0.85014 (+/-0.007172) |
219 | | - 9 ( ) accept suboptimal roc_auc=0.84344 (+/-0.007818) |
220 | | - 10 + better suboptimal roc_auc=0.84802 (+/-0.007281) |
| 138 | + Initial best: 0.84917 |
| 139 | + 1 ( ) accept suboptimal roc_auc=0.84467 (+/-0.007843) |
| 140 | + 2 <3 new best roc_auc=0.84956 (+/-0.007013) |
| 141 | + 3 ( ) accept suboptimal roc_auc=0.84384 (+/-0.008042) |
| 142 | + 4 + better suboptimal roc_auc=0.84952 (+/-0.00757) |
| 143 | + 5 ( ) accept suboptimal roc_auc=0.84357 (+/-0.008148) |
| 144 | + 6 + better suboptimal roc_auc=0.84848 (+/-0.007499) |
| 145 | + 7 ( ) accept suboptimal roc_auc=0.84391 (+/-0.008097) |
| 146 | + 8 + better suboptimal roc_auc=0.84853 (+/-0.007036) |
| 147 | + 9 ( ) accept suboptimal roc_auc=0.84471 (+/-0.007812) |
| 148 | + 10 x restart from best roc_auc=0.84935 (+/-0.007313) |
221 | 149 |
|
222 | 150 | --- |
223 | 151 |
|
224 | 152 | Code |
225 | 153 | set.seed(40) |
226 | 154 | rf_res_finetune <- tune_sim_anneal(wf_rf, resamples = bt) |
227 | 155 | Message |
228 | | - i Creating pre-processing data to finalize unknown parameter: mtry |
| 156 | + i Creating pre-processing data to finalize 1 unknown parameter: "mtry" |
229 | 157 | Optimizing roc_auc |
230 | | - Initial best: 0.84418 |
231 | | - 1 <3 new best roc_auc=0.84839 (+/-0.007753) |
232 | | - 2 ( ) accept suboptimal roc_auc=0.84384 (+/-0.008085) |
233 | | - 3 <3 new best roc_auc=0.84857 (+/-0.007615) |
234 | | - 4 ( ) accept suboptimal roc_auc=0.8435 (+/-0.007746) |
235 | | - 5 + better suboptimal roc_auc=0.84804 (+/-0.00774) |
236 | | - 6 ( ) accept suboptimal roc_auc=0.84338 (+/-0.007515) |
237 | | - 7 <3 new best roc_auc=0.84923 (+/-0.007371) |
238 | | - 8 ( ) accept suboptimal roc_auc=0.84389 (+/-0.007938) |
239 | | - 9 <3 new best roc_auc=0.84926 (+/-0.007163) |
240 | | - 10 ( ) accept suboptimal roc_auc=0.84397 (+/-0.00741) |
| 158 | + Initial best: 0.84369 |
| 159 | + 1 <3 new best roc_auc=0.84929 (+/-0.007889) |
| 160 | + 2 ( ) accept suboptimal roc_auc=0.84461 (+/-0.008084) |
| 161 | + 3 + better suboptimal roc_auc=0.84785 (+/-0.007989) |
| 162 | + 4 ( ) accept suboptimal roc_auc=0.84325 (+/-0.007817) |
| 163 | + 5 + better suboptimal roc_auc=0.84917 (+/-0.007376) |
| 164 | + 6 ( ) accept suboptimal roc_auc=0.84458 (+/-0.007566) |
| 165 | + 7 + better suboptimal roc_auc=0.84871 (+/-0.007483) |
| 166 | + 8 ( ) accept suboptimal roc_auc=0.84431 (+/-0.007694) |
| 167 | + 9 x restart from best roc_auc=0.84861 (+/-0.007929) |
| 168 | + 10 ( ) accept suboptimal roc_auc=0.84522 (+/-0.008113) |
241 | 169 |
|
242 | 170 | # incompatible parameter objects |
243 | 171 |
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