Skip to content

describe_transcript() returns all NA for description (example from documentation) #339

@um-scripts

Description

@um-scripts

Hello,

I encountered an issue with the describe_transcript() function in tidybulk, where the description column is returned entirely as NA.

I followed the example provided in the documentation:
https://tidyomics.github.io/tidybulk/reference/describe_transcript-methods.html

Reproducible example:

## Load airway dataset for examples
data("airway", package = "airway")

## Ensure a 'condition' column exists for examples expecting it
SummarizedExperiment::colData(airway)$condition <- 
  SummarizedExperiment::colData(airway)$dex

## Run describe_transcript
desc_transcripts_airway <- describe_transcript(airway)

## Check number of non-NA descriptions
sum(!is.na(rowData(desc_transcripts_airway)$description))

Output:

[1] 0
Image

Thank you.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions