Add docker compose and use logger in template

Author: mmaelicke

docker-compose.yml

@@ -0,0 +1,12 @@
+services:
+  template:
+    build:
+      context: .
+      dockerfile: Dockerfile
+    volumes:
+      - ./src:/src
+      - ./in:/in
+      - ./out:/out
+    environment:
+      - TOOL_RUN=foobar
+    command: python run.py

src/run.py

@@ -1,9 +1,9 @@
 import os
 from datetime import datetime as dt
-from pprint import pprint
 
 from json2args import get_parameter
 from json2args.data import get_data
+from json2args.logger import logger
 
 # parse parameters
 kwargs = get_parameter()
@@ -15,16 +15,16 @@
 # switch the tool
 if toolname == 'foobar':
     # RUN the tool here and create the output in /out
-    print('This toolbox does not include any tool. Did you run the template?\n')
+    logger.info('This toolbox does not include any tool. Did you run the template?\n')
 
     # write parameters to STDOUT.log
-    pprint(kwargs)
+    logger.info(kwargs)
 
     for name, ds in data.items():
-        print(f"\n### {name}")
-        print(ds)
+        logger.info(f"\n### {name}")
+        logger.info(ds)
 
 
 # In any other case, it was not clear which tool to run
 else:
-    raise AttributeError(f"[{dt.now().isocalendar()}] Either no TOOL_RUN environment variable available, or '{toolname}' is not valid.\n")
+    raise AttributeError(f"[{dt.now().isocalendar()}] Either no TOOL_RUN environment variable available, or '{toolname}' is not valid.\n")