Fill PDMP Med Columns (#56)

* modified dashboard to display plain risk factor language. Also added one overlooked section to summary.json

* Added in FHIR references to include quantity data for EHR meds.
It does not appear to break anything for patients that don't have quantity data, but needs to be checked in our server with a patient that does have quantity data.

* fix cql code to retrieve quantity, pharmacy and dispensed date

* add prescriber information

* Update src/cql/r4/Factors_to_Consider_in_Managing_Chronic_Pain_FHIRv400.cql

Remove trailing whitespace

Co-authored-by: Amy Chen <[email protected]>
Co-authored-by: Ivan Cvitkovic <[email protected]>

Author: 3 people

src/components/summary.json

@@ -137,11 +137,11 @@
            {
              "headers": {
                "Drug Description": "Name",
-               "Quantity": { "key": "Quantity", "formatter": "stringSubstitutionFormat", "formatterArguments": [""], "sortable": false},
+               "Quantity": { "key": "Quantity", "sortable": true},
                "Written Date": { "key": "Start", "formatter": "datishFormat" },
                "Dispensed": { "key": "End", "formatter": "datishFormat" },
-               "Prescriber": { "key": "Prescriber", "formatter": "stringSubstitutionFormat", "formatterArguments": [""], "sortable": false},
-               "Pharmacy": { "key": "Pharmacy", "formatter": "stringSubstitutionFormat", "formatterArguments": [""], "sortable": false}
+               "Prescriber": { "key": "Prescriber", "sortable": true},
+               "Pharmacy": { "key": "Pharmacy", "sortable": true}
              }
            }
          ]
@@ -174,11 +174,11 @@
            {
              "headers": {
                "Drug Description": "Name",
-               "Quantity": { "key": "Quantity", "formatter": "stringSubstitutionFormat", "formatterArguments": [""], "sortable": false},
+               "Quantity": { "key": "Quantity", "sortable": true},
                "Written Date": { "key": "Start", "formatter": "datishFormat" },
                "Dispensed": { "key": "End", "formatter": "datishFormat" },
-               "Prescriber": { "key": "Prescriber", "formatter": "stringSubstitutionFormat", "formatterArguments": [""], "sortable": false},
-               "Pharmacy": { "key": "Pharmacy", "formatter": "stringSubstitutionFormat", "formatterArguments": [""], "sortable": false}
+               "Prescriber": { "key": "Prescriber", "sortable": true},
+               "Pharmacy": { "key": "Pharmacy", "sortable": true}
              },
              "flags": [
                {

src/cql/r4/Factors_to_Consider_in_Managing_Chronic_Pain_FHIRv400.cql

@@ -810,7 +810,14 @@ define ReportOpioidMedicationRequests:
     Type:  'Request',
     Name:  ConceptText(O.medication as FHIR.CodeableConcept),
     Start: DateTimeText(O.authoredOn),
-    End:   null as String, // MedicationRequest end date not supported in R4,
+    //provided by the extension dateValue, may not always be there
+    End: DateText(O.dispenseRequest.extension[1].value),
+    //End:   null as String, // MedicationRequest end date not supported in R4,
+    //Amount: QuantityText(O.value as FHIR.Quantity),
+    //provided by the extension valueString, may not always be there
+    Quantity: QuantityText(O.dispenseRequest.quantity as FHIR.Quantity),
+    Prescriber: O.requester.display.value,
+    Pharmacy: (O.dispenseRequest.extension[0].value as FHIR.string).value,
     Status: O.status.value
   }
   sort by Start desc, End desc
@@ -822,6 +829,7 @@ define ReportOpioidMedicationStatements:
     Name:  ConceptText(S.medication as FHIR.CodeableConcept),
     Start: MedicationStatementDate(S),
     End:   DateTimeText((S.effective as FHIR.Period)."end"),
+    //Amount: QuantityText(S.value as FHIR.Quantity),
     Status: S.status.value
   }
   sort by Start desc, End desc
@@ -850,7 +858,12 @@ define ReportNonOpioidMedicationRequests:
     Type:  'Request',
     Name:  ConceptText(O.medication as FHIR.CodeableConcept),
     Start: DateTimeText(O.authoredOn),
-    End:   null as String, // MedicationRequest end date not supported in R4,
+    //End:   null as String, // MedicationRequest end date not supported in R4,
+    End: DateText(O.dispenseRequest.extension[1].value),
+    //Amount: QuantityText(O.value as FHIR.Quantity),
+    Quantity: QuantityText(O.dispenseRequest.quantity as FHIR.Quantity),
+    Prescriber: O.requester.display.value,
+    Pharmacy: (O.dispenseRequest.extension[0].value as FHIR.string).value,
     Status: O.status.value
   }
   sort by Start desc, End desc
@@ -862,6 +875,7 @@ define ReportNonOpioidMedicationStatements:
     Name:  ConceptText(S.medication as FHIR.CodeableConcept),
     Start: MedicationStatementDate(S),
     End:   DateTimeText((S.effective as FHIR.Period)."end"),
+    //Quantity: QuantityText(S.value as FHIR.Quantity),
     Status: S.status.value
   }
   sort by Start desc, End desc