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pjotrp

Emit warning when genotypes are overwritten with too many ALTs

Jan 15, 2023

3e76eab · Jan 15, 2023

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This branch is 10 commits ahead of, 11 commits behind vcflib/vcflib:master.

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Name		Name	Last commit message	Last commit date
parent directory ..
10134514.vcf		10134514.vcf	Looking into trailing BP bug	May 4, 2022
10158243-after-vcfwave-overlapping-genotype.vcf		10158243-after-vcfwave-overlapping-genotype.vcf	Emit warning when genotypes are overwritten with too many ALTs	Jan 15, 2023
10158243-after-vcfwave.vcf		10158243-after-vcfwave.vcf	Add zig support and matching functionality for vcfcreatmulti	Aug 10, 2022
10158243.vcf		10158243.vcf	vcfallelicprimitives: added shell output support for tests and show s…	Apr 15, 2022
1kGP_high_coverage_Illumina.chr1.filtered.SNV_INDEL_SV_phased_panel-head-1000.vcf.gz		1kGP_high_coverage_Illumina.chr1.filtered.SNV_INDEL_SV_phased_panel-head-1000.vcf.gz	Emit warning when genotypes are overwritten with too many ALTs	Jan 15, 2023
1kGP_high_coverage_Illumina.chr1.filtered.SNV_INDEL_SV_phased_panel-head-1000.vcf.gz.tbi		1kGP_high_coverage_Illumina.chr1.filtered.SNV_INDEL_SV_phased_panel-head-1000.vcf.gz.tbi	Emit warning when genotypes are overwritten with too many ALTs	Jan 15, 2023
1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz		1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz	Missing fields in genotypes are now backfilled in Variant.h. This fixes	Mar 30, 2016
1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz.tbi		1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz.tbi	Missing fields in genotypes are now backfilled in Variant.h. This fixes	Mar 30, 2016
512184.vcf		512184.vcf	Looking at new CIGAR bug and introduce test file	May 6, 2022
empty.vcf		empty.vcf	VCF with no data rows for Issue vcflib#169	Oct 1, 2019
grch38#chr4_10083863-10181258.vcf		grch38#chr4_10083863-10181258.vcf	Added WFA test case for short sequences	May 4, 2022
grch38#chr8_36353854-36453166-bcftools-normalised.vcf		grch38#chr8_36353854-36453166-bcftools-normalised.vcf	Add bcftools normalised version of grch38 sample file	Jan 11, 2023
grch38#chr8_36353854-36453166.vcf		grch38#chr8_36353854-36453166.vcf	Added example VCF files for vcfallelicprimitives	Apr 14, 2022
inversion.vcf		inversion.vcf	Introduced reverision test/example for WF	May 5, 2022
sample.compressed.vcf.gz		sample.compressed.vcf.gz	basic tests now running	Mar 28, 2016
sample.compressed.vcf.gz.tbi		sample.compressed.vcf.gz.tbi	basic tests now running	Mar 28, 2016
sample.vcf		sample.vcf	directory restructuring, cleanup, documentation improvements	Sep 10, 2013
scaffold612.phased.vcf		scaffold612.phased.vcf	rephasing	May 3, 2014
scaffold612.vcf		scaffold612.vcf	rephasing	May 3, 2014
test-dup.vcf		test-dup.vcf	Adding two test vcfs	Jul 6, 2022
test-multi.vcf		test-multi.vcf	Adding two test vcfs	Jul 6, 2022
vcfcreate-multi.vcf		vcfcreate-multi.vcf	Add zig support and matching functionality for vcfcreatmulti	Aug 10, 2022
z.vcf		z.vcf	Introduced reverision test/example for WF	May 5, 2022
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