docs/notebooks/widget_segmentations_beta.ipynb

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 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {
    "nbsphinx": "hidden"
   },
   "source": [
    "# Vitessce Widget Tutorial"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from vitessce import (\n",
    "    VitessceConfig,\n",
    "    Component as cm,\n",
    "    CoordinationType as ct,\n",
    "    OmeTiffWrapper,\n",
    "    MultiImageWrapper,\n",
    "    CoordinationLevel as CL,\n",
    "    ObsSegmentationsOmeTiffWrapper,\n",
    "    ImageOmeTiffWrapper,\n",
    "    get_initial_coordination_scope_prefix,\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "vc = VitessceConfig(schema_version=\"1.0.16\")\n",
    "dataset = vc.add_dataset(name='Spraggins').add_object(\n",
    "    ImageOmeTiffWrapper(\n",
    "        img_url=\"https://storage.googleapis.com/vitessce-demo-data/kpmp-f2f-march-2023/S-1905-017737/S-1905-017737_PAS_2of2_bf.ome.tif\",\n",
    "        offsets_url=\"https://storage.googleapis.com/vitessce-demo-data/kpmp-f2f-march-2023/S-1905-017737/S-1905-017737_PAS_2of2_bf.offsets.json\"\n",
    "    )\n",
    ").add_object(\n",
    "    ObsSegmentationsOmeTiffWrapper(\n",
    "        img_url=\"https://storage.googleapis.com/vitessce-demo-data/kpmp-f2f-march-2023/S-1905-017737/S-1905-017737_PAS_2of2.ome.tif\",\n",
    "        offsets_url=\"https://storage.googleapis.com/vitessce-demo-data/kpmp-f2f-march-2023/S-1905-017737/S-1905-017737_PAS_2of2.offsets.json\",\n",
    "        obs_types_from_channel_names=True\n",
    "    )\n",
    ")\n",
    "\n",
    "spatial = vc.add_view(\"spatialBeta\", dataset=dataset)\n",
    "lc = vc.add_view(\"layerControllerBeta\", dataset=dataset)\n",
    "\n",
    "vc.link_views_by_dict([spatial, lc], {\n",
    "    \"imageLayer\": CL([\n",
    "        {\n",
    "          \"photometricInterpretation\": \"RGB\"   \n",
    "        }\n",
    "    ]),\n",
    "}, meta=True, scope_prefix=get_initial_coordination_scope_prefix(\"A\", \"image\"))\n",
    "\n",
    "vc.layout(spatial | lc);"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "vw = vc.widget()\n",
    "vw"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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