Question about -ah / -an usage in command line mode

[zimachen]

Hi,

I have a question about the command-line parameters -ah and -an.

I have tried:

• Using -ah and -an directly
• Using -ah yes / -an yes
• Using -ah 1 / -an 1

But the neutral loss function does not seem to work correctly.

Could you please tell me the correct usage of these two parameters?
Do they require a value, or are they just simple flags?

Thank you very much for your help!

↑command line mode
java -jar "C:\Users\20536\Desktop\PDV-2.2.0\PDV-2.2.0.jar" -s "D:\PXD035950--PDV\mgf\adult_cortex_85868.mgf"
-st 1 -r "D:\PXD035950-mzid\PXD035950_sep_and_proteome\adult_cortex_85868_sep_and_proteome.mzid"
-rt 1 -i "D:\PXD035950--PDV\PXD035950_R1A_target_long.txt"
-k s -o "E:\test"
-a 0.5 -ah -an -c 3 -ft png -fh 500 -fw 900

↑GUI mode

Zima

[KaiLiCn]

Hi Zima,

Sorry for the late reply. Could you try using ah an only without -?

Kai