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About the max length of simulated HIFI read #1

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11malong opened this issue Aug 1, 2022 · 2 comments
Open

About the max length of simulated HIFI read #1

11malong opened this issue Aug 1, 2022 · 2 comments

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@11malong
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11malong commented Aug 1, 2022

For HIFI read generated, what is the max length of HIFI read?

@yukiteruono
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Thank you for your using PBSIM3. The maximum HiFi read length is 1 million.
If you get an error message "ERROR: length parameters are not appropriate", the generation of read length distribution is not working properly, so please change the value of --length-sd.
For multi-pass sequencing in WGS simulation, the read length is set roughly equal to the value of --length-mean, and --length-sd is disabled. There was a bug in the --length-mean check, which has now been fixed.

@11malong
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11malong commented Aug 2, 2022

Thank you so much!

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