add travis and appveyor

Travis CI tests that the package installs on macOS and Linux.

Appveyor tests that the package installs on Windows.

Author: slowkow

.travis.yml

@@ -1,24 +1,19 @@
-# Sample .travis.yml for R projects
-
 language: r
+os: linux
+cache: packages
+warnings_are_errors: true
+r_check_args: "--no-manual --timings"
 
 bioc_packages:
     - BiocStyle
     - SingleCellExperiment
 
-matrix:
+jobs:
   include:
   - r: release
     os: osx
   - r: release
     os: linux
-#  - r: devel
-#    os: linux
-
-sudo: false
-cache: packages
-warnings_are_errors: true
-r_check_args: "--no-manual --timings"
 
 env:
  global:

DESCRIPTION

@@ -28,10 +28,10 @@ Imports:
     Matrix,
     methods,
     tibble,
-    rlang
+    rlang,
+    SingleCellExperiment
 Suggests:
     Seurat,
-    SingleCellExperiment,
     testthat,
     knitr,
     rmarkdown,

appveyor.yml

@@ -0,0 +1,60 @@
+# DO NOT CHANGE the "init" and "install" sections below
+
+# Download script file from GitHub
+init:
+  ps: |
+        $ErrorActionPreference = "Stop"
+        Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
+        Import-Module '..\appveyor-tool.ps1'
+
+install:
+  ps: Bootstrap
+
+# This is a good reference:
+# https://github.com/Bioconductor/BiocManager/blob/master/appveyor.yml
+
+cache:
+  - C:\RLibrary
+
+environment:
+  global:
+    _R_CHECK_FORCE_SUGGESTS_: false
+    R_ARCH: x64
+    USE_RTOOLS: true
+    R_CHECK_ARGS: "--no-manual --timings"
+
+  matrix:
+  - R_VERSION: release
+    BIOC_USE_DEVEL: FALSE
+
+build_script:
+  - echo Current directory=%CD%
+  - travis-tool.sh install_deps
+  - travis-tool.sh install_bioc_deps
+  - travis-tool.sh install_r Seurat
+
+test_script:
+  - travis-tool.sh run_tests
+
+on_failure:
+  - 7z a failure.zip *.Rcheck\*
+  - appveyor PushArtifact failure.zip
+
+artifacts:
+  - path: '*.Rcheck\**\*.log'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.out'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.fail'
+    name: Logs
+
+  - path: '*.Rcheck\**\*.Rout'
+    name: Logs
+
+  - path: '\*_*.tar.gz'
+    name: Bits
+
+  - path: '\*_*.zip'
+    name: Bits

configure

@@ -0,0 +1,6 @@
+#!/bin/bash
+if [ $(uname) == "Linux" ]
+then
+  echo 'CXX_STD = CXX11' > ./src/Makevars
+  echo 'PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)' >> ./src/Makevars
+fi