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Feedback #1

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cc8a139
Setting up GitHub Classroom Feedback
github-classroom[bot] Sep 26, 2023
cdf300d
Update Report.ipynb
Caqpo Nov 1, 2023
246247f
Update Report.ipynb
Andreacallegaro01 Nov 1, 2023
dd806f6
Create Images
Andreacallegaro01 Nov 1, 2023
1d96a64
Update Report.ipynb
Ainara26 Nov 1, 2023
f9466ea
test
Andreacallegaro01 Nov 1, 2023
4462f91
Create iJO1366_V0
Caqpo Nov 1, 2023
512f675
Create iJO1366_V0.ipynb
Caqpo Nov 1, 2023
f914295
Your commit message here
Ainara26 Nov 7, 2023
8f799cf
Your commit message here
Ainara26 Nov 7, 2023
71a0d04
Problem definition
maria11-rs Nov 7, 2023
8d522c2
......
Ainara26 Nov 8, 2023
cb11099
escher delete
Andreacallegaro01 Nov 8, 2023
dd7287e
GSM part
Andreacallegaro01 Nov 8, 2023
ed470ad
GSM part
Andreacallegaro01 Nov 8, 2023
c013efa
Added model to folder
Caqpo Nov 8, 2023
07bc9cf
Update table
maria11-rs Nov 8, 2023
2e1e1a1
Update Report.ipynb
maria11-rs Nov 8, 2023
434d082
table
maria11-rs Nov 8, 2023
1005af0
no table
maria11-rs Nov 8, 2023
0a34101
Initial adding of reaction and metabolites
Caqpo Nov 8, 2023
433cbc3
add of modified model
Ainara26 Nov 9, 2023
eb40579
modified_model
Ainara26 Nov 9, 2023
97edb9c
hola
Ainara26 Nov 9, 2023
d06ba56
son pruebas :)
Ainara26 Nov 9, 2023
e67a9b5
first optgene
Ainara26 Nov 10, 2023
a10342a
knock out extended
Ainara26 Nov 10, 2023
9128667
find_gene_knockout_reactions modification
Ainara26 Nov 10, 2023
68d90af
last knock out
Ainara26 Nov 10, 2023
f5e7170
first gene_prediction_targets
Ainara26 Nov 10, 2023
4653ab2
Gene_prediction
Ainara26 Nov 10, 2023
699c162
error in rows and check of target reactions
Ainara26 Nov 11, 2023
6308eb1
creating ipynb for media opt
Caqpo Nov 11, 2023
af210eb
commenting out xml maker
Caqpo Nov 11, 2023
91e525c
delete file in analysis dir and move to models dir
Caqpo Nov 11, 2023
ff9b78c
First Media Optimization
Caqpo Nov 11, 2023
e20d641
Added gene assoc. and balanced mass in reaction
Caqpo Nov 12, 2023
41f61e5
improved mass and charge balance
Caqpo Nov 12, 2023
dc1b820
added ethylene transport out of cell
Caqpo Nov 14, 2023
254e1c9
Initial maximum yield calculations
Caqpo Nov 14, 2023
e38ee67
maria
maria11-rs Nov 15, 2023
b637d91
fk table
maria11-rs Nov 16, 2023
8eb120f
fk table 2.0
maria11-rs Nov 16, 2023
59d643f
finish part 3
maria11-rs Nov 16, 2023
99277ea
knock out
Ainara26 Nov 16, 2023
27ee06f
delete excel
maria11-rs Nov 16, 2023
0abea7e
knock_opt and gene_prediction changes
Ainara26 Nov 16, 2023
6202054
last changes
Ainara26 Nov 17, 2023
17ee410
Gene prediction corrected
Ainara26 Nov 17, 2023
07de3fe
new folders: hetero path and KO
Andreacallegaro01 Nov 17, 2023
30e3827
table
Ainara26 Nov 18, 2023
0f543fb
delete table
Ainara26 Nov 18, 2023
7b12c8b
Report
Ainara26 Nov 18, 2023
ccfead4
phenotype + table changes
maria11-rs Nov 20, 2023
af56800
Commenting out stuff to prevent clogging of files
Caqpo Nov 20, 2023
cc88992
Updated media_optimization after changes to model
Caqpo Nov 20, 2023
62365b2
Updating maximum_yield after model change
Caqpo Nov 20, 2023
b9edfc2
Initial dFBA simulation
Caqpo Nov 20, 2023
4943a31
boundry
Ainara26 Nov 22, 2023
56163a3
boundry cahnge-gene target downregulation
Ainara26 Nov 24, 2023
e1e28c7
report changes
Ainara26 Nov 24, 2023
bc3e2a2
dFBA test folder
Andreacallegaro01 Nov 26, 2023
97f5f42
dFBA test
Andreacallegaro01 Nov 26, 2023
afd5427
changes
maria11-rs Nov 28, 2023
ac6cd7a
change
maria11-rs Nov 28, 2023
22cda96
optknock updated
Ainara26 Nov 28, 2023
4a93135
added my report parts
Caqpo Nov 28, 2023
814ee7e
andre part 4 and discussion
Andreacallegaro01 Nov 29, 2023
beb6163
changes
maria11-rs Nov 29, 2023
dd20cb4
small report adjustment and economics
Caqpo Nov 29, 2023
7a40bd0
up&downregulation with reactions+discussion
Ainara26 Nov 29, 2023
75dff58
Report gene target + memote tests
Ainara26 Nov 29, 2023
062d204
overexpression picture
Ainara26 Nov 29, 2023
d1303ae
report_part4_discussion
maria11-rs Nov 30, 2023
e515296
strain_implementation
Andreacallegaro01 Nov 30, 2023
d2a3f18
upgraded report and pathways
Andreacallegaro01 Nov 30, 2023
ea6731a
report updated
Caqpo Dec 2, 2023
1eb9339
Update README.md
Caqpo Dec 4, 2023
fc4dd61
Readme written
Caqpo Dec 4, 2023
0e36b1b
Cosmetic changes to report
Caqpo Dec 4, 2023
39d9277
final touches? no, lol
Caqpo Dec 4, 2023
8768b40
figures and tables
Ainara26 Dec 4, 2023
21eb5fd
summary
maria11-rs Dec 4, 2023
b941dea
last changes
Ainara26 Dec 4, 2023
fe021cb
Final changes.
Andreacallegaro01 Dec 4, 2023
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