Tutorials I've followed and I've shared with my co-workers and other bioinformatitians. I know there are more resources for tutorials, but sometimes it's easier to refere to some common sources and scripts. Plus, I can re-use these in my workshops and eventual classes ^_^
Some tools require a particular version of python and a particular version of libraries. Here's a short deployment of virtual environments to install GOATOOLS. Here we create 2 virtual environments and the readme contains a more detailed explanation than the scripts.
I use this hierarchy of files and dummy files to make workshops of initiation to Linux in command line I'll add the sort of thing we do there. There are some sample files in data to make people practice with real files, and how to detect an empty file. On the playground we'll be creating projects to practice more advanced things, where all errors are acceptable. Once a script will be "ready" to work autonomously it will be placed in another folder.
A script to count the GC contents of a fasta file. Followed by the instructions to use it