Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 6
Repositories
- ephys-sorting-manual-curation Public
Repository for collecting manual curation data for spike-sorting
AllenNeuralDynamics/ephys-sorting-manual-curation’s past year of commit activity - dynamic-foraging-task Public
Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity - aind-data-transfer-service Public
FastAPI service to run data compression and transfer jobs on the hpc
AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity - aind-fip-dff Public
This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
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