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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 352 repositories
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 25 MIT 17 54 7 Updated Feb 28, 2025
  • ephys-sorting-manual-curation Public

    Repository for collecting manual curation data for spike-sorting

    AllenNeuralDynamics/ephys-sorting-manual-curation’s past year of commit activity
    Python 1 0 0 0 Updated Feb 28, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 100 (1 issue needs help) 10 Updated Feb 28, 2025
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 18 (1 issue needs help) 1 Updated Feb 28, 2025
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 15 (1 issue needs help) 2 Updated Feb 27, 2025
  • AllenNeuralDynamics/aind-neuropixel-deepinterpolation-2’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 27, 2025
  • AllenNeuralDynamics/dynamic-routing-unit-drift-qc-dashboard’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 27, 2025
  • aind-analysis-arch-result-access Public

    accessing results from aind analysis architecture

    AllenNeuralDynamics/aind-analysis-arch-result-access’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Feb 27, 2025
  • harp.device.valve-controller Public

    0368: a 16-channel valve controller

    AllenNeuralDynamics/harp.device.valve-controller’s past year of commit activity
    C++ 0 0 3 1 Updated Feb 28, 2025
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 9 1 Updated Feb 28, 2025