Add missing real_t header to split_neurite_element_event.h #586
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name: Singularity Integration | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
types: [opened, synchronize, reopened] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
build: | |
name: Build | |
runs-on: ubuntu-latest | |
container: | |
image: quay.io/singularity/singularity:v3.9.0 | |
options: "--privileged --workdir /data" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Add root user to subuid and subgid... | |
run: | | |
echo root:100000:65536 >> /etc/subuid | |
echo root:100000:65536 >> /etc/subgid | |
- name: Set correct branch... | |
run: | | |
export GITHUB_BRANCH_NAME=${{ github.head_ref || github.ref_name }} | |
sed -i "s|BDM_BRANCH=\"master\"|BDM_BRANCH=\"$GITHUB_BRANCH_NAME\"|" Singularity | |
- name: Build singularity image... | |
run: | | |
chmod 777 . | |
singularity build --fakeroot Singularity.sif Singularity | |
- name: Source Biodynamo and run demo... | |
run: | | |
singularity exec --cleanenv -i Singularity.sif bash -c "source /biodynamo/build/third_party/root/bin/thisroot.sh && source /biodynamo/build/bin/thisbdm.sh && \ | |
export DISPLAY=:99.0 && /biodynamo/util/xvfb-initd.sh start && cd $(mktemp -d) && bdm demo tumor_concept && cd tumor_concept && bdm clean && bdm run" |