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@BoevaLab

Boeva Lab, ETH Zurich

Computational (Epi-)genetics of Cancer

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  1. FREEC FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 151 49

  2. ONCOCNV ONCOCNV Public

    ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

    R 24 12

  3. LILY LILY Public

    Detection of super-enhancers in cancer data

    R 20 9

  4. SV-Bay SV-Bay Public

    Detection of structural variants in cancer mate-pair and paired-end data

    Python 12 2

  5. CanSig CanSig Public

    Discovering de novo shared transcriptional programs in single cancer cells

    Python 12 3

  6. HMCan HMCan Public

    C++ 7 3

Repositories

Showing 10 of 36 repositories
  • BoevaLab/GWAS-power’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 13, 2024
  • CancerFoundation Public

    CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

    BoevaLab/CancerFoundation’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Nov 12, 2024
  • scAugmentBench Public

    Benchmarking Self-Supervised Learning for Single-Cell Data

    BoevaLab/scAugmentBench’s past year of commit activity
    Python 4 0 0 0 Updated Oct 28, 2024
  • BoevaLab/survboard’s past year of commit activity
    R 6 MIT 0 0 0 Updated Oct 28, 2024
  • MTRNA-sc-cancer Public

    Repository containing all the code necessary for reproducing the paper "Filtering cells with high mitochondrial content removes viable metabolically altered malignant cell populations in cancer single-cell studies" (Yates, Kraft, and Boeva)

    BoevaLab/MTRNA-sc-cancer’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 15, 2024
  • FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    BoevaLab/FREEC’s past year of commit activity
    C++ 151 49 89 10 Updated Aug 22, 2024
  • BoevaLab/sparsesurv’s past year of commit activity
    Python 2 BSD-3-Clause 0 5 0 Updated Jul 16, 2024
  • infercnvpy Public Forked from icbi-lab/infercnvpy

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    BoevaLab/infercnvpy’s past year of commit activity
    Python 1 BSD-3-Clause 27 0 1 Updated May 21, 2024
  • scalop Public Forked from jlaffy/scalop

    Single Cell Analysis Operations

    BoevaLab/scalop’s past year of commit activity
    R 0 MIT 19 0 0 Updated May 16, 2024
  • BoevaLab/ANS_supplementary_information’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 29, 2024

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