GitHub - BonnerLab/deepbottleneck_neuro

NSD_DATA_PATH : e.g. ".../for_atlas"

NSD_STIMULI_PATH: e.g. '.../nsd_stimuli.hdf5'

BACKPROP_TRAINING_PATH : where all backrpop runs are saved, e.g. '.../bottleneck_training_runs'

ENCODING_EVAL_PATH : where all encoding evaluation results will be saved, e.g. '.../deep_bottleneck_data/encoding_eval'

ENCODING_CACHE_PATH : where cached files should be saved to speed up evaluation, e.g. '.../deep_bottleneck_data/encoding_cache'

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
2026_0328_deep_bottleneck_training_params_phase_comparison_lr1e-3_pca.json		2026_0328_deep_bottleneck_training_params_phase_comparison_lr1e-3_pca.json
2026_0328_deep_bottleneck_training_params_phase_comparison_lr1e-3_rand.json		2026_0328_deep_bottleneck_training_params_phase_comparison_lr1e-3_rand.json
2026_0328_launch_scat_training_lr1e-3_refactor_ap.sh		2026_0328_launch_scat_training_lr1e-3_refactor_ap.sh
2026_0328_test_encoding.py		2026_0328_test_encoding.py
README.md		README.md
_visualization.py		_visualization.py
brainmap_helper.py		brainmap_helper.py
calc_encoding.py		calc_encoding.py
classifier.py		classifier.py
encoding_score_monkey.py		encoding_score_monkey.py
encoding_score_tools_new.py		encoding_score_tools_new.py
environment.yml		environment.yml
figure3c.ipynb		figure3c.ipynb
figure4a.ipynb		figure4a.ipynb
figure4b.ipynb		figure4b.ipynb
figure5.ipynb		figure5.ipynb
figureS2_resnet.ipynb		figureS2_resnet.ipynb
figureS3_scrambled.ipynb		figureS3_scrambled.ipynb
initialise_models.py		initialise_models.py
main.py		main.py
main_new.py		main_new.py
main_new_OG.py		main_new_OG.py
projection.py		projection.py
regression.py		regression.py
scattering.py		scattering.py
srp.py		srp.py
standardization.py		standardization.py
test_bootstrapped_brainmaps.ipynb		test_bootstrapped_brainmaps.ipynb
torch_cv.py		torch_cv.py
training.py		training.py
training_alternate_layers.py		training_alternate_layers.py
utils.py		utils.py
visualise_brainmaps.ipynb		visualise_brainmaps.ipynb

Navigation Menu