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Updates for easier rendering (local and remote) #1

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974699e
explicit unit parameter, spacing comments
zachperiscopic Oct 3, 2023
aa115c5
Rename files, no spaces. Move global knitr options after imports
zachperiscopic Oct 6, 2023
57125d2
remove pacman, install with library
zachperiscopic Oct 6, 2023
44d042f
remove unused directory settings (do not need to set root directory)
zachperiscopic Oct 6, 2023
352d76f
update chunk label
zachperiscopic Oct 6, 2023
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2 changes: 1 addition & 1 deletion EFA debug.R → EFA_debug.R
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
source("EFA functions.R")
source("EFA_functions.R")
require(data.table)

CountriesChoice<-c("Kenya","Burundi","Tanzania","Uganda","Rwanda")
Expand Down
0 EFA functions.R → EFA_functions.R
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46 changes: 21 additions & 25 deletions EFA markdown.Rmd → EFA_markdown.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -12,37 +12,33 @@ runtime: shiny
margin-right: auto;
}
</style>

```{r Setup, include=FALSE}
#knitr::opts_knit$set(root.dir = "C:/AICCRA_EFA")
#knitr::opts_knit$set(root.dir = getwd())
knitr::opts_chunk$set(echo = F)
```

```{r Setup - load packages,echo=F,message=FALSE}
if(!require("pacman", character.only = TRUE)){install.packages("pacman",dependencies = T)}

required.packages <- c("colourpicker",
"data.table",
"dplyr",
"DT",
"FAOSTAT",
"jrvFinance",
"raster",
"RJSONIO",
"rgdal",
"terra",
"shiny",
"sf",
"viridis")

pacman::p_load(char=required.packages,install = T,character.only = T)

library(colourpicker)
library(data.table)
library(dplyr)
library(DT)
library(FAOSTAT)
library(jrvFinance)
library(raster)
library(RJSONIO)
library(rgdal)
library(terra)
library(shiny)
library(sf)
library(viridis)
library(knitr)

options(scipen = 999)
```

```{r Setup - chunk options, include=FALSE}
knitr::opts_chunk$set(echo = F)
```

```{r Setup - source functions,echo=F,message=FALSE}
source("EFA functions.R")
source("EFA_functions.R")
```

## AICCRA - Economic and Financial Analysis Tool (EFAt) {.tabset .tabset-fade .tabset-pills}
Expand Down Expand Up @@ -428,7 +424,7 @@ CellSize.ha<-terra::cellSize(BaseRaster,mask=T, unit="ha")
CountryRast<-terra::rasterize(CGIAR_countries,BaseRaster,"ADMIN")
CountryAreas<-data.table(
terra::zonal(
x=terra::cellSize(CountryRast,mask=T,"ha"),
x=terra::cellSize(CountryRast,mask=T, unit="ha"),
z=CountryRast,
sum))

Expand Down