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Windows IMOD install instructions
Windows IMOD install instructions
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Download the appropriate 'Cygwin Installer' from: http://bio3d.colorado.edu/imod/download.html#Cygwin Run the downloaded '.exe' file and follow installation directions that appear NOTE: "When running Cygwin setup you MUST change the selection from "Default" to "Install" in the Select Packages dialog. A note about this will be displayed during installation as well. 
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Download the appropriate IMOD 'clickable installer' from: http://bio3d.colorado.edu/imod/download.html#Latest-Windows NOTE: If you don't know your CUDA version just pick the installer for 'Windows 64-bit with CUDA 3.0' Run the downloaded '.exe' file and choose to install IMOD with the default options. 
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Verify that you can open the IMOD GUI, 3dmod. Open Cygwin by double-clicking the desktop icon and, at the Cygwin command line, type:3dmod and hit enter. You should see the following pop up: 