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process.errorStrategy = 'finish' suppresses the upstream retry on exit codes 125/139

Status: Open.

#47 In CoBrALab/MAGeTBrain-nextflow;

· CMonnin opened on Jul 28, 2026

cleanup = true from alliance_canada config breaks -resume after a successful run

Status: Open.

#46 In CoBrALab/MAGeTBrain-nextflow;

· CMonnin opened on Jul 28, 2026

Throw error if insufficient samples/templates/atleses provided

Status: Open.

#39 In CoBrALab/MAGeTBrain-nextflow;

· CMonnin opened on Feb 5, 2026

Move Niagara/Trillium docs to a wiki

Status: Open.

#30 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Nov 18, 2025

Add some docs on how to use the container

Status: Open.

#29 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Nov 17, 2025

Batching jobs for slurm

Status: Open.

#21 In CoBrALab/MAGeTBrain-nextflow;

· CMonnin opened on Jul 11, 2025

Outputs for validateInputDirectoryStructure should be "atlases, templates, subjects"

Status: Open.

#20 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Jun 10, 2025

accept BIDS as input

Status: Open.

#16 In CoBrALab/MAGeTBrain-nextflow;

· CMonnin opened on Apr 22, 2025

Set default resource requirements

Status: Open.

#15 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Apr 14, 2025

Check if scripts in bin/ can be directly used in a container without having to copy them in.

Status: Open.

#13 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Mar 26, 2025

Implement multispectral registration

Status: Open.

#11 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Mar 13, 2025

Support masks as part of input

Status: Open.

#9 In CoBrALab/MAGeTBrain-nextflow;

· gdevenyi opened on Mar 13, 2025