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  1. reg-gen reg-gen Public

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    Python 108 30

  2. CrossTalkeR CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    Jupyter Notebook 42 10

  3. scopen scopen Public

    scOpen: single-cell open chromatin analysis via NMF modelling

    Python 26 4

  4. MOJITOO MOJITOO Public

    MOJITOO: a fast and universal method for integration of multimodal single cell data

    R 10 1

  5. sc2marker sc2marker Public

    Surface Marker Detection Using Single Cell Data

    HTML 9 2

  6. CimpleG CimpleG Public

    CimpleG, an R package to find (small) CpG signatures.

    R 6

Repositories

Showing 10 of 43 repositories
  • pyCrossTalkeR Public

    pyCrossTalkeR is a framework for network analysis and visualisation of Ligand Receptor networks

    CostaLab/pyCrossTalkeR’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated May 6, 2025
  • sigurd Public

    Using single cell genotype data, the cells are annotated and analysed.

    CostaLab/sigurd’s past year of commit activity
    R 8 0 0 0 Updated May 5, 2025
  • CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    CostaLab/CrossTalkeR’s past year of commit activity
    Jupyter Notebook 42 MIT 10 5 0 Updated Apr 29, 2025
  • scACCorDiON Public

    Comparing Directed Weighted Graphs

    CostaLab/scACCorDiON’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Apr 29, 2025
  • CostaLab/scACCorDiON.su’s past year of commit activity
    R 0 0 0 0 Updated Apr 29, 2025
  • Nichesphere Public
    CostaLab/Nichesphere’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 28, 2025
  • LR2TF Public
    CostaLab/LR2TF’s past year of commit activity
    R 0 0 0 0 Updated Apr 25, 2025
  • phlower Public

    Use hodge decomposition for trajectory analysis

    CostaLab/phlower’s past year of commit activity
    Python 4 AGPL-3.0 0 0 0 Updated Mar 26, 2025
  • PILOT Public

    Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    CostaLab/PILOT’s past year of commit activity
    Python 21 MIT 3 1 1 Updated Mar 25, 2025
  • scrna_seurat_pipeline Public

    comprehensive analysis of single-cell transcriptomics data

    CostaLab/scrna_seurat_pipeline’s past year of commit activity
    R 21 9 4 0 Updated Mar 20, 2025

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