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throw error when several bam files match possibleTumorSampleNamePrefixes set

Status: Open.

#29 In DKFZ-ODCF/COWorkflowsBasePlugin;

· GWarsow opened on Feb 19, 2019

searchMergedBamsWithSeparator must be set explicitely when using exact sample name match for sample from file extraction.

bug

Status: Open.

#27 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Jan 29, 2019

Hint for reworking the COMetadataAccessor

Status: Open.

#24 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Dec 4, 2018

Create isControlWorkflow / isNoControlWorkflow in a new tool script

enhancement

Status: Open.

#17 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on May 28, 2018

Move all plugins to depend on this version of the COWorkflows plugin

Status: Open.

#10 In DKFZ-ODCF/COWorkflowsBasePlugin;

· vinjana opened on Dec 20, 2017

Create a base workflow (or wrapper) which allows to use the cohort loading code in an easy way.

enhancement

Status: Open.

#8 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Dec 11, 2017

Create a fastq base workflow for single and paired end processing

enhancement

Status: Open.

#7 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Dec 11, 2017

Pull Fastq loading code to this plugin

enhancement

Status: Open.

#6 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Dec 11, 2017

If the bam samples are passed via sample_list, also override possibleControl/TumorSampleName...

enhancement

Status: Open.

#5 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Nov 7, 2017

If Bam files cannot be found, make a better log message

enhancement

Status: Open.

#3 In DKFZ-ODCF/COWorkflowsBasePlugin;

· dankwart-de opened on Nov 6, 2017