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Expand Up @@ -46,7 +46,7 @@ Requires

http://hgdownload.cse.ucsc.edu/downloads.html

* tfs object file for the species of interests, in .rdata format, which contains the curated transcription factor motifs database. For Homo_sapiens, it is provided by tfTarget package, and will be used by default. For others species, we provide a convenient script get.tfs.R to call rtfbsdb, and generate the species.tfs.rdata. Please use `--tfs.path` to specify the tfs object file rather than Homo_sapiens when you call `run_tfTarget.bsh`
* tfs object file for the species of interests, in .rdata format, which contains the curated transcription factor motifs database. For Homo_sapiens, it is provided by tfTarget package, and will be used by default. For others species, we provide a convenient script get.tfs.R to call rtfbsdb, and generate the species.tfs.rdata. Please use `-tfs.path` to specify the tfs object file rather than Homo_sapiens when you call `run_tfTarget.bsh`

example:
```````
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