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Improve readability of extractFiles-- its cyclomatic complexity needs to be reduced.. Resolves #139.

@forsyth2 forsyth2 added the priority: low Low priority task label Jul 21, 2021
@forsyth2 forsyth2 self-assigned this Jul 21, 2021
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Changes are from April. Code will need to be rebased before continuing work.

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Reduce extractFiles complexity

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