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bedroge
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@bedroge bedroge commented Jan 20, 2025

39 out of 82 required modules missing:

* Zip/3.0-GCCcore-12.3.0 (Zip-3.0-GCCcore-12.3.0.eb)
* Eigen/3.4.0-GCCcore-12.3.0 (Eigen-3.4.0-GCCcore-12.3.0.eb)
* Catch2/2.13.9-GCCcore-12.3.0 (Catch2-2.13.9-GCCcore-12.3.0.eb)
* dill/0.3.7-GCCcore-12.3.0 (dill-0.3.7-GCCcore-12.3.0.eb)
* Bazel/6.3.1-GCCcore-12.3.0 (Bazel-6.3.1-GCCcore-12.3.0.eb)
* double-conversion/3.3.0-GCCcore-12.3.0 (double-conversion-3.3.0-GCCcore-12.3.0.eb)
* flatbuffers-python/23.5.26-GCCcore-12.3.0 (flatbuffers-python-23.5.26-GCCcore-12.3.0.eb)
* flatbuffers/23.5.26-GCCcore-12.3.0 (flatbuffers-23.5.26-GCCcore-12.3.0.eb)
* giflib/5.2.1-GCCcore-12.3.0 (giflib-5.2.1-GCCcore-12.3.0.eb)
* Cython/3.0.8-GCCcore-12.3.0 (Cython-3.0.8-GCCcore-12.3.0.eb)
* Szip/2.1.1-GCCcore-12.3.0 (Szip-2.1.1-GCCcore-12.3.0.eb)
* pkgconfig/1.5.5-GCCcore-12.3.0-python (pkgconfig-1.5.5-GCCcore-12.3.0-python.eb)
* hypothesis/6.82.0-GCCcore-12.3.0 (hypothesis-6.82.0-GCCcore-12.3.0.eb)
* pybind11/2.11.1-GCCcore-12.3.0 (pybind11-2.11.1-GCCcore-12.3.0.eb)
* ICU/73.2-GCCcore-12.3.0 (ICU-73.2-GCCcore-12.3.0.eb)
* JsonCpp/1.9.5-GCCcore-12.3.0 (JsonCpp-1.9.5-GCCcore-12.3.0.eb)
* FFTW/3.3.10-GCC-12.3.0 (FFTW-3.3.10-GCC-12.3.0.eb)
* BLIS/0.9.0-GCC-12.3.0 (BLIS-0.9.0-GCC-12.3.0.eb)
* NASM/2.16.01-GCCcore-12.3.0 (NASM-2.16.01-GCCcore-12.3.0.eb)
* make/4.4.1-GCCcore-12.3.0 (make-4.4.1-GCCcore-12.3.0.eb)
* libjpeg-turbo/2.1.5.1-GCCcore-12.3.0 (libjpeg-turbo-2.1.5.1-GCCcore-12.3.0.eb)
* OpenBLAS/0.3.23-GCC-12.3.0 (OpenBLAS-0.3.23-GCC-12.3.0.eb)
* FlexiBLAS/3.3.1-GCC-12.3.0 (FlexiBLAS-3.3.1-GCC-12.3.0.eb)
* gfbf/2023a (gfbf-2023a.eb)
* SciPy-bundle/2023.07-gfbf-2023a (SciPy-bundle-2023.07-gfbf-2023a.eb)
* nsync/1.26.0-GCCcore-12.3.0 (nsync-1.26.0-GCCcore-12.3.0.eb)
* gompi/2023a (gompi-2023a.eb)
* FFTW.MPI/3.3.10-gompi-2023a (FFTW.MPI-3.3.10-gompi-2023a.eb)
* ScaLAPACK/2.2.0-gompi-2023a-fb (ScaLAPACK-2.2.0-gompi-2023a-fb.eb)
* mpi4py/3.1.4-gompi-2023a (mpi4py-3.1.4-gompi-2023a.eb)
* HDF5/1.14.0-gompi-2023a (HDF5-1.14.0-gompi-2023a.eb)
* foss/2023a (foss-2023a.eb)
* h5py/3.9.0-foss-2023a (h5py-3.9.0-foss-2023a.eb)
* snappy/1.1.10-GCCcore-12.3.0 (snappy-1.1.10-GCCcore-12.3.0.eb)
* Abseil/20230125.3-GCCcore-12.3.0 (Abseil-20230125.3-GCCcore-12.3.0.eb)
* protobuf/24.0-GCCcore-12.3.0 (protobuf-24.0-GCCcore-12.3.0.eb)
* protobuf-python/4.24.0-GCCcore-12.3.0 (protobuf-python-4.24.0-GCCcore-12.3.0.eb)
* RE2/2023-08-01-GCCcore-12.3.0 (RE2-2023-08-01-GCCcore-12.3.0.eb)
* TensorFlow/2.13.0-foss-2023a (TensorFlow-2.13.0-foss-2023a.eb)

@bedroge bedroge added 2023.06-software.eessi.io 2023.06 version of software.eessi.io sapphirerapids labels Jan 20, 2025
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eessi-bot bot commented Jan 20, 2025

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphire_rapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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eessi-bot bot commented Jan 20, 2025

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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Instance eessi-bot-vsc-ugent is configured to build for:

  • architectures: x86_64/amd/zen3
  • repositories: eessi-hpc.org-2023.06-software, eessi.io-2023.06-compat, eessi.io-2023.06-software, eessi-hpc.org-2023.06-compat

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bedroge commented Jan 20, 2025

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-vsc-ugent (click for details)
  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

    • no jobs were submitted

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eessi-bot bot commented Jan 20, 2025

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-sapphire_rapids for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.01/pr_864/41590

date job status comment
Jan 20 15:36:57 UTC 2025 submitted job id 41590 awaits release by job manager
Jan 20 15:37:44 UTC 2025 released job awaits launch by Slurm scheduler
Jan 20 15:43:55 UTC 2025 running job 41590 is running
Jan 20 16:32:11 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-41590.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737390402.tar.gzsize: 18 MiB (19643296 bytes)
entries: 349
modules under 2023.06/software/linux/x86_64/intel/sapphire_rapids/modules/all
BLIS/0.9.0-GCC-12.3.0.lua
FFTW/3.3.10-GCC-12.3.0.lua
FFTW.MPI/3.3.10-gompi-2023a.lua
gompi/2023a.lua
make/4.4.1-GCCcore-12.3.0.lua
software under 2023.06/software/linux/x86_64/intel/sapphire_rapids/software
BLIS/0.9.0-GCC-12.3.0
FFTW/3.3.10-GCC-12.3.0
FFTW.MPI/3.3.10-gompi-2023a
gompi/2023a
make/4.4.1-GCCcore-12.3.0
other under 2023.06/software/linux/x86_64/intel/sapphire_rapids
no other files in tarball
Jan 20 16:32:11 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-41590.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jan 20, 2025

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

    • no jobs were submitted

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eessi-bot bot commented Jan 20, 2025

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-sapphire_rapids for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.01/pr_864/41592

date job status comment
Jan 20 19:58:35 UTC 2025 submitted job id 41592 awaits release by job manager
Jan 20 19:58:52 UTC 2025 released job awaits launch by Slurm scheduler
Jan 20 20:04:00 UTC 2025 running job 41592 is running
Jan 20 21:18:22 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-41592.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737407547.tar.gzsize: 46 MiB (48636424 bytes)
entries: 1672
modules under 2023.06/software/linux/x86_64/intel/sapphire_rapids/modules/all
BLIS/0.9.0-GCC-12.3.0.lua
Catch2/2.13.9-GCCcore-12.3.0.lua
Eigen/3.4.0-GCCcore-12.3.0.lua
FFTW/3.3.10-GCC-12.3.0.lua
FFTW.MPI/3.3.10-gompi-2023a.lua
FlexiBLAS/3.3.1-GCC-12.3.0.lua
foss/2023a.lua
gfbf/2023a.lua
gompi/2023a.lua
hypothesis/6.82.0-GCCcore-12.3.0.lua
make/4.4.1-GCCcore-12.3.0.lua
OpenBLAS/0.3.23-GCC-12.3.0.lua
pybind11/2.11.1-GCCcore-12.3.0.lua
ScaLAPACK/2.2.0-gompi-2023a-fb.lua
software under 2023.06/software/linux/x86_64/intel/sapphire_rapids/software
BLIS/0.9.0-GCC-12.3.0
Catch2/2.13.9-GCCcore-12.3.0
Eigen/3.4.0-GCCcore-12.3.0
FFTW/3.3.10-GCC-12.3.0
FFTW.MPI/3.3.10-gompi-2023a
FlexiBLAS/3.3.1-GCC-12.3.0
foss/2023a
gfbf/2023a
gompi/2023a
hypothesis/6.82.0-GCCcore-12.3.0
make/4.4.1-GCCcore-12.3.0
OpenBLAS/0.3.23-GCC-12.3.0
pybind11/2.11.1-GCCcore-12.3.0
ScaLAPACK/2.2.0-gompi-2023a-fb
other under 2023.06/software/linux/x86_64/intel/sapphire_rapids
no other files in tarball
Jan 20 21:18:22 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-41592.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Jan 20, 2025

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids
  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

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eessi-bot bot commented Jan 20, 2025

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-sapphire_rapids for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.01/pr_864/41593

date job status comment
Jan 20 21:24:37 UTC 2025 submitted job id 41593 awaits release by job manager
Jan 20 21:25:31 UTC 2025 released job awaits launch by Slurm scheduler
Jan 20 21:26:35 UTC 2025 running job 41593 is running
Jan 21 02:39:41 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-41593.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737426561.tar.gzsize: 630 MiB (660626776 bytes)
entries: 34630
modules under 2023.06/software/linux/x86_64/intel/sapphire_rapids/modules/all
Abseil/20230125.3-GCCcore-12.3.0.lua
Bazel/6.3.1-GCCcore-12.3.0.lua
BLIS/0.9.0-GCC-12.3.0.lua
Catch2/2.13.9-GCCcore-12.3.0.lua
Cython/3.0.8-GCCcore-12.3.0.lua
dill/0.3.7-GCCcore-12.3.0.lua
double-conversion/3.3.0-GCCcore-12.3.0.lua
Eigen/3.4.0-GCCcore-12.3.0.lua
FFTW/3.3.10-GCC-12.3.0.lua
FFTW.MPI/3.3.10-gompi-2023a.lua
flatbuffers/23.5.26-GCCcore-12.3.0.lua
flatbuffers-python/23.5.26-GCCcore-12.3.0.lua
FlexiBLAS/3.3.1-GCC-12.3.0.lua
foss/2023a.lua
gfbf/2023a.lua
giflib/5.2.1-GCCcore-12.3.0.lua
gompi/2023a.lua
h5py/3.9.0-foss-2023a.lua
HDF5/1.14.0-gompi-2023a.lua
hypothesis/6.82.0-GCCcore-12.3.0.lua
ICU/73.2-GCCcore-12.3.0.lua
JsonCpp/1.9.5-GCCcore-12.3.0.lua
libjpeg-turbo/2.1.5.1-GCCcore-12.3.0.lua
make/4.4.1-GCCcore-12.3.0.lua
mpi4py/3.1.4-gompi-2023a.lua
NASM/2.16.01-GCCcore-12.3.0.lua
nsync/1.26.0-GCCcore-12.3.0.lua
OpenBLAS/0.3.23-GCC-12.3.0.lua
pkgconfig/1.5.5-GCCcore-12.3.0-python.lua
protobuf/24.0-GCCcore-12.3.0.lua
protobuf-python/4.24.0-GCCcore-12.3.0.lua
pybind11/2.11.1-GCCcore-12.3.0.lua
RE2/2023-08-01-GCCcore-12.3.0.lua
ScaLAPACK/2.2.0-gompi-2023a-fb.lua
SciPy-bundle/2023.07-gfbf-2023a.lua
snappy/1.1.10-GCCcore-12.3.0.lua
Szip/2.1.1-GCCcore-12.3.0.lua
TensorFlow/2.13.0-foss-2023a.lua
Zip/3.0-GCCcore-12.3.0.lua
software under 2023.06/software/linux/x86_64/intel/sapphire_rapids/software
Abseil/20230125.3-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
BLIS/0.9.0-GCC-12.3.0
Catch2/2.13.9-GCCcore-12.3.0
Cython/3.0.8-GCCcore-12.3.0
dill/0.3.7-GCCcore-12.3.0
double-conversion/3.3.0-GCCcore-12.3.0
Eigen/3.4.0-GCCcore-12.3.0
FFTW/3.3.10-GCC-12.3.0
FFTW.MPI/3.3.10-gompi-2023a
flatbuffers/23.5.26-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
FlexiBLAS/3.3.1-GCC-12.3.0
foss/2023a
gfbf/2023a
giflib/5.2.1-GCCcore-12.3.0
gompi/2023a
h5py/3.9.0-foss-2023a
HDF5/1.14.0-gompi-2023a
hypothesis/6.82.0-GCCcore-12.3.0
ICU/73.2-GCCcore-12.3.0
JsonCpp/1.9.5-GCCcore-12.3.0
libjpeg-turbo/2.1.5.1-GCCcore-12.3.0
make/4.4.1-GCCcore-12.3.0
mpi4py/3.1.4-gompi-2023a
NASM/2.16.01-GCCcore-12.3.0
nsync/1.26.0-GCCcore-12.3.0
OpenBLAS/0.3.23-GCC-12.3.0
pkgconfig/1.5.5-GCCcore-12.3.0-python
protobuf/24.0-GCCcore-12.3.0
protobuf-python/4.24.0-GCCcore-12.3.0
pybind11/2.11.1-GCCcore-12.3.0
RE2/2023-08-01-GCCcore-12.3.0
ScaLAPACK/2.2.0-gompi-2023a-fb
SciPy-bundle/2023.07-gfbf-2023a
snappy/1.1.10-GCCcore-12.3.0
Szip/2.1.1-GCCcore-12.3.0
TensorFlow/2.13.0-foss-2023a
Zip/3.0-GCCcore-12.3.0
other under 2023.06/software/linux/x86_64/intel/sapphire_rapids
no other files in tarball
Jan 21 02:39:41 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-41593.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Jan 21 07:36:21 UTC 2025 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737426561.tar.gz to S3 bucket succeeded

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bedroge commented Jan 21, 2025

Though this worked, I had to use additional patches for the OpenBLAS and SciPy-bundle easyconfigs. I guess we can go ahead and merge this, and then do a rebuild of thosr modules for all CPU targets to make sure everything is the same?

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ocaisa commented Jan 21, 2025

I looked at the OpenBLAS patch and that doesn't seem worth the rebuild (it just catches the Sapphaire Rapids for some if statements). The SCipy one is a bug fix though, and that one may be worth it. Either way, this can be deployed.

@ocaisa ocaisa added the bot:deploy Ask bot to deploy missing software installations to EESSI label Jan 21, 2025
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bedroge commented Jan 21, 2025

I looked at the OpenBLAS patch and that doesn't seem worth the rebuild (it just catches the Sapphaire Rapids for some if statements). The SCipy one is a bug fix though, and that one may be worth it. Either way, this can be deployed.

See #866.

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ocaisa commented Jan 21, 2025

Staging PR ingested

@ocaisa ocaisa merged commit 9693125 into EESSI:2023.06-software.eessi.io Jan 21, 2025
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eessi-bot bot commented Jan 21, 2025

PR merged! Moved ['/project/def-users/SHARED/jobs/2025.01/pr_864/41590', '/project/def-users/SHARED/jobs/2025.01/pr_864/41592', '/project/def-users/SHARED/jobs/2025.01/pr_864/41593'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.01.21

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eessi-bot bot commented Jan 21, 2025

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.01.21

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gpu-bot-ugent bot commented Jan 21, 2025

PR merged! Moved [] to /scratch/gent/vo/002/gvo00211/SHARED/trash_bin/EESSI/software-layer/2025.01.21

@bedroge bedroge deleted the sapphire_rapids_tensorflow_2.13.0 branch January 21, 2025 08:39
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