test: add jaxley benchmark

builddeps/requirements_lock_3_11.txt

@@ -382,6 +382,10 @@ decorator==5.2.1 \
     --hash=sha256:65f266143752f734b0a7cc83c46f4618af75b8c5911b00ccb61d0ac9b6da0360 \
     --hash=sha256:d316bb415a2d9e2d2b3abcc4084c6502fc09240e292cd76a76afc106a1c8e04a
     # via gcsfs
+diffrax==0.7.0 \
+    --hash=sha256:aa9645c40552f11a2d32042ef6b9fcd53c1f0f6bdbe32d37cb788669ca9910be \
+    --hash=sha256:f3bcc578cd92a9ca86fc6f5a54c1de76c1ba62f74de69b56002624bf205316f1
+    # via jaxley-mech
 dinosaur==1.3.5 \
     --hash=sha256:aa3830f66a7ceb5cb900689d9b0717100eea74ae4d04f206a9fa20408cee3dc9 \
     --hash=sha256:fd75996d62104d5c602a4f2643a1154268e6cd6ed9fd1c295aab679c6fba60b3
@@ -405,6 +409,14 @@ einops==0.8.1 \
     --hash=sha256:919387eb55330f5757c6bea9165c5ff5cfe63a642682ea788a6d472576d81737 \
     --hash=sha256:de5d960a7a761225532e0f1959e5315ebeafc0cd43394732f103ca44b9837e84
     # via jax-md
+equinox==0.13.2 \
+    --hash=sha256:509ad744ff99b7c684d45230d6890f9e78eac1a556d7a06db1eff664a3cac74f \
+    --hash=sha256:bc1ee687e4841945d8b776664403839639a05e2f2c02c1da353ff3386e0e43b0
+    # via
+    #   diffrax
+    #   jaxley-mech
+    #   lineax
+    #   optimistix
 etils[epath]==1.13.0 \
     --hash=sha256:a5b60c71f95bcd2d43d4e9fb3dc3879120c1f60472bb5ce19f7a860b1d44f607 \
     --hash=sha256:d9cd4f40fbe77ad6613b7348a18132cc511237b6c076dbb89105c0b520a4c6bb
@@ -910,21 +922,34 @@ jaraco-functools==4.4.0 \
     --hash=sha256:9eec1e36f45c818d9bf307c8948eb03b2b56cd44087b3cdc989abca1f20b9176 \
     --hash=sha256:da21933b0417b89515562656547a77b4931f98176eb173644c0d35032a33d6bb
     # via cheroot
+jax[cpu]==0.8.2 \
+    --hash=sha256:1a685ded06a8223a7b52e45e668e406049dbbead02873f2b5a4d881ba7b421ae \
+    --hash=sha256:d0478c5dc74406441efcd25731166a65ee782f13c352fa72dc7d734351909355
+    # via
+    #   -r builddeps/requirements.in
+    #   jaxley-mech
 jax[cuda12]==0.8.2 \
     --hash=sha256:1a685ded06a8223a7b52e45e668e406049dbbead02873f2b5a4d881ba7b421ae \
     --hash=sha256:d0478c5dc74406441efcd25731166a65ee782f13c352fa72dc7d734351909355
     # via
     #   -r builddeps/requirements.in
     #   chex
+    #   diffrax
     #   dinosaur
     #   e3nn-jax
+    #   equinox
     #   flax
     #   jax-md
+    #   jaxley
+    #   jaxley-mech
     #   jraph
+    #   lineax
     #   neuralgcm
     #   optax
+    #   optimistix
     #   orbax-checkpoint
     #   tree-math
+    #   tridiax
 jax-cuda12-pjrt==0.8.2 \
     --hash=sha256:717a1b196a642409ce195ddf031c20bbeadcc886f55e49a1d3f4927373aeedae \
     --hash=sha256:e3bab41ca7c48e4163db9e7efd271b3aa85f0fe45f5ed0708d6bbed93a59f977
@@ -947,6 +972,16 @@ jax-md==0.2.27 \
     --hash=sha256:3506cf7c07b84d6c9cf09243097bef465c81122a23ca8cc78a3627c8b9d97322 \
     --hash=sha256:efbefa5089a995a5c02405a4c930ba42f8eaf9322482998b5a422e45f631a0ab
     # via -r builddeps/test-requirements.txt
+jaxley==0.13.0 \
+    --hash=sha256:0d9247b340b402f974aad827e0cd79e32c5cd66d7295d95514792a108e15f00b \
+    --hash=sha256:277f135714f1370b7246754d64687357ec443e3a944f1a96633dfd4eaaafcc3e
+    # via
+    #   -r builddeps/test-requirements.txt
+    #   jaxley-mech
+jaxley-mech==0.3.1 \
+    --hash=sha256:bd46cb2f02d1f76af56406ef83c464b6f9fc9742625cd88371a1923e14f601e8 \
+    --hash=sha256:cc5eda21c8521e32795526f9f85ca52941899449b0a491d3ffdb321f3f0c8cbd
+    # via -r builddeps/test-requirements.txt
 jaxlib==0.8.2 \
     --hash=sha256:023de6f3f56da2af7037970996500586331fdb50b530ecbb54b9666da633bd00 \
     --hash=sha256:05b958f497e49824c432e734bb059723b7dfe69e2ad696a9f9c8ad82fff7c3f8 \
@@ -980,6 +1015,14 @@ jaxlib==0.8.2 \
     #   jraph
     #   neuralgcm
     #   optax
+jaxtyping==0.3.5 \
+    --hash=sha256:8150ad5b72b62fa63f573d492a79e9e455f070abe3b260f7dc15270b3eb9bba6 \
+    --hash=sha256:862c39fa2e526274e82dc96ee8dbe9369dadb651ab1e05d95bd685acb4e2ef02
+    # via
+    #   diffrax
+    #   equinox
+    #   lineax
+    #   optimistix
 jmp==0.0.4 \
     --hash=sha256:5dfeb0fd7c7a9f72a70fff0aab9d0cbfae32a809c02f4037ff3485ceb33e1730 \
     --hash=sha256:6aa7adbddf2bd574b28c7faf6e81a735eb11f53386447896909c6968dc36807d
@@ -1097,6 +1140,12 @@ kiwisolver==1.4.9 \
     --hash=sha256:fb940820c63a9590d31d88b815e7a3aa5915cad3ce735ab45f0c730b39547de1 \
     --hash=sha256:fc1795ac5cd0510207482c3d1d3ed781143383b8cfd36f5c645f3897ce066220
     # via matplotlib
+lineax==0.0.8 \
+    --hash=sha256:1bd21d6c41afda233769d1c1096329ee75181825c9136be65c92b41f6daa1ddb \
+    --hash=sha256:bb2778066b8882acc88ff569d8e415bc5aa387f751b14ae262c9f9607d7f25bb
+    # via
+    #   diffrax
+    #   optimistix
 locket==1.0.0 \
     --hash=sha256:5c0d4c052a8bbbf750e056a8e65ccd309086f4f0f18a2eac306a8dfa4112a632 \
     --hash=sha256:b6c819a722f7b6bd955b80781788e4a66a55628b858d347536b7e81325a3a5e3
@@ -1252,7 +1301,10 @@ matplotlib==3.10.8 \
     --hash=sha256:f97aeb209c3d2511443f8797e3e5a569aebb040d4f8bc79aa3ee78a8fb9e3dd8 \
     --hash=sha256:f9b587c9c7274c1613a30afabf65a272114cd6cdbe67b3406f818c79d7ab2e2a \
     --hash=sha256:fb061f596dad3a0f52b60dc6a5dec4a0c300dec41e058a7efe09256188d170b7
-    # via pymatgen
+    # via
+    #   jaxley
+    #   jaxley-mech
+    #   pymatgen
 mdurl==0.1.2 \
     --hash=sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8 \
     --hash=sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba
@@ -1546,7 +1598,9 @@ nest-asyncio==1.6.0 \
 networkx==3.6.1 \
     --hash=sha256:26b7c357accc0c8cde558ad486283728b65b6a95d85ee1cd66bafab4c8168509 \
     --hash=sha256:d47fbf302e7d9cbbb9e2555a0d267983d2aa476bac30e90dfbe5669bd57f3762
-    # via pymatgen
+    # via
+    #   jaxley
+    #   pymatgen
 neuralgcm==1.2.2 \
     --hash=sha256:24edbbb5d21e2d17a7475738f84602885eb011af3a23c33df293b2c5d10ac11c \
     --hash=sha256:795297260a5aff05708e855fe8cb27db7cc0f514e9c34e373e4ba378732327e5
@@ -1640,6 +1694,8 @@ numpy==2.1.3 \
     #   flax
     #   jax
     #   jax-md
+    #   jaxley
+    #   jaxley-mech
     #   jaxlib
     #   jmp
     #   jraph
@@ -1657,6 +1713,7 @@ numpy==2.1.3 \
     #   spglib
     #   tensorstore
     #   treescope
+    #   tridiax
     #   xarray
     #   xarray-tensorstore
     #   zarr
@@ -1742,6 +1799,10 @@ optax==0.2.6 \
     #   flax
     #   jax-md
     #   neuralgcm
+optimistix==0.0.11 \
+    --hash=sha256:acb4fb23b598db03e376900fcb61aee8dd511de41411e849661c0ffe9e4cd1c6 \
+    --hash=sha256:cfce0de98e7e9fdbcc2ce6d49a9f82cd3166fd0eee29c0c7a1983f8aefd37757
+    # via diffrax
 orbax-checkpoint==0.11.31 \
     --hash=sha256:b00e39cd61cbd6c7c78b091ccac0ed1bbf3cf7788e761618e7070761195bfcc0 \
     --hash=sha256:f021193a619782655798bc4a285f40612f6fe647ddeb303d1f49cdbc5645e319
@@ -1906,6 +1967,8 @@ pandas==2.3.3 \
     --hash=sha256:f8bfc0e12dc78f777f323f55c58649591b2cd0c43534e8355c51d3fede5f4dee
     # via
     #   dinosaur
+    #   jaxley
+    #   jaxley-mech
     #   neuralgcm
     #   pymatgen
     #   xarray
@@ -2743,18 +2806,26 @@ treescope==0.1.10 \
     --hash=sha256:20f74656f34ab2d8716715013e8163a0da79bdc2554c16d5023172c50d27ea95 \
     --hash=sha256:dde52f5314f4c29d22157a6fe4d3bd103f9cae02791c9e672eefa32c9aa1da51
     # via flax
+tridiax==0.2.1 \
+    --hash=sha256:311b0ed41671303197e219019fb9d22d6b31c841ddf5fdd1ec2601e09ed4e750 \
+    --hash=sha256:95a8c6d003cdd694487c99e5ba2c43d4fb4dfbe3a3df96e9ac2c80c1c4aaecd1
+    # via jaxley
 typing-extensions==4.15.0 \
     --hash=sha256:0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466 \
     --hash=sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548
     # via
     #   aiosignal
     #   chex
+    #   diffrax
+    #   equinox
     #   etils
     #   flax
     #   flexcache
     #   flexparser
     #   grpcio
+    #   lineax
     #   numcodecs
+    #   optimistix
     #   orbax-checkpoint
     #   pint
     #   spglib
@@ -2771,6 +2842,13 @@ urllib3==2.6.2 \
     --hash=sha256:016f9c98bb7e98085cb2b4b17b87d2c702975664e4f060c6532e64d1c1a5e797 \
     --hash=sha256:ec21cddfe7724fc7cb4ba4bea7aa8e2ef36f607a4bab81aa6ce42a13dc3f03dd
     # via requests
+wadler-lindig==0.1.7 \
+    --hash=sha256:81d14d3fe77d441acf3ebd7f4aefac20c74128bf460e84b512806dccf7b2cd55 \
+    --hash=sha256:e3ec83835570fd0a9509f969162aeb9c65618f998b1f42918cfc8d45122fe953
+    # via
+    #   diffrax
+    #   equinox
+    #   jaxtyping
 werkzeug==3.1.4 \
     --hash=sha256:2ad50fb9ed09cc3af22c54698351027ace879a0b60a3b5edf5730b2f7d876905 \
     --hash=sha256:cd3cd98b1b92dc3b7b3995038826c68097dcb16f9baa63abe35f20eafeb9fe5e

builddeps/test-requirements.txt

@@ -5,6 +5,9 @@ protobuf >= 6
 
 jax-md; sys_platform == 'linux'
 
+jaxley; sys_platform == 'linux'
+jaxley_mech; sys_platform == 'linux'
+
 # maxtext can't be installed concurrently, but installing it fixes
 # https://github.com/wsmoses/maxtext/archive/bc50722be7d89e4003bd830b80e4ac968be658eb.tar.gz; python_version < "3.12"
 # maxtext; python_version < "3.13"

src/enzyme_ad/jax/Implementations/CHLODerivatives.td

@@ -80,6 +80,7 @@ def IsInf : HLOInst<"IsInfOp">;
 def IsNegInf : HLOInst<"IsNegInfOp">;
 def IsPosInf : HLOInst<"IsPosInfOp">;
 def Lgamma : HLOInst<"LgammaOp">;
+def Square : HLOInst<"SquareOp">;
 
 /// CHLO - broadcasting compare operation
 def BroadcastCompare : HLOInst<"BroadcastCompareOp">;
@@ -142,3 +143,7 @@ def : HLODerivative<"SinhOp", (Op $x), [(Mul (DiffeRet), (Cosh $x))]>;
 def : HLODerivative<"TanOp", (Op $x), [
   (Div (DiffeRet), (Mul (Cos $x), (Cos $x)))
 ]>;
+
+def : HLODerivative<"SquareOp", (Op $x), [
+  (Mul (DiffeRet), (Mul (HLOConstantFP<"2"> $x), $x))
+]>;

test/BUILD

@@ -122,6 +122,25 @@ py_test(
     deps = TEST_DEPS,
 )
 
+py_test(
+    name = "jaxley_test",
+    timeout = "eternal",
+    srcs = [
+        "jaxley_test.py",
+        "test_utils.py",
+        "xprof_utils.py",
+    ],
+    imports = ["."],
+    tags = ["exclusive"],
+    deps = TEST_DEPS + select({
+        "@bazel_tools//src/conditions:linux_x86_64": [
+            "@pypi_jaxley//:pkg",
+            "@pypi_jaxley_mech//:pkg",
+        ],
+        "//conditions:default": [],
+    }),
+)
+
 py_test(
     name = "jaxmd",
     timeout = "eternal",
@@ -192,6 +211,7 @@ test_suite(
     name = "python_tests",
     tests = [
         ":bench_vs_xla",
+        ":jaxley_test",
         ":jaxmd",
         ":llama",
         ":neuralgcm_test",