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fix: extra dcm file name types + message if unknown input #46

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fix: extra dcm file name types + message if unknown input #46

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8 changes: 6 additions & 2 deletions med2image/med2image.py
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Original file line number Diff line number Diff line change
Expand Up @@ -792,7 +792,9 @@ def inputFile_defineFromSubStr(astr_dir):

b_niftiExt = (str_inputFileExtension == '.nii' or
str_inputFileExtension == '.gz')
b_dicomExt = str_inputFileExtension == '.dcm'
b_dicomExt = (str_inputFileExtension == '.dcm' or
str_inputFileExtension == '.IMA' or
re.search(r"(^|/)MR\.",args.inputFile))

self.C_convert = None
if b_niftiExt:
Expand All @@ -812,7 +814,7 @@ def inputFile_defineFromSubStr(astr_dir):

print('sliceToConvert:', args.sliceToConvert)

if b_dicomExt:
elif b_dicomExt:
self.C_convert = med2image_dcm(
inputFile = args.inputFile,
inputDir = args.inputDir,
Expand All @@ -828,3 +830,5 @@ def inputFile_defineFromSubStr(astr_dir):
func = args.func,
verbosity = args.verbosity
)
else:
print(f"ERROR: dont know what to do with {args.inputFile}. not dcm or nii?")