pl-bichamfer is a ChRIS
ds plugin wrapper around a bi-directional mincchamfer program.
It creates a radial distance map for every MINC mask image inside a
given input directory.
pl-bichamfer is a ChRIS plugin, meaning it can
run from either within ChRIS or the command-line.
To get started with local command-line usage, use Apptainer
(a.k.a. Singularity) to run pl-bichamfer as a container.
To print its available options, run:
apptainer exec docker://fnndsc/pl-bichamfer bichamfer --helpConvert a directory containing .mnc mask images to distance map volumes, where output files use the same file names as their corresponding files:
apptainer exec docker://fnndsc/pl-bichamfer bichamfer input_masks/ output_chamfers/If the input directory is the same as the output directory, then output file
names are renamed to have the suffix .chamfer.mnc. This is useful for running
pl-bichamfer "in-place" on all masks in the current working directory:
apptainer exec docker://fnndsc/pl-bichamfer bichamfer . .