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@HopkinsIDD

Infectious Disease Dynamics Group at Johns Hopkins University

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  1. COVIDScenarioPipeline COVIDScenarioPipeline Public archive

    Public shared code for doing scenario forecasting and creating reports for various governmental entities.

    HTML 104 48

  2. ncov_incubation ncov_incubation Public

    Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

    57 21

  3. covidRTPCR covidRTPCR Public

    Analysis of RT-PCR sensitivity by day since exposure or symptom onset

    Stan 24 11

  4. hit-covid hit-covid Public

    Data and Codebook for the HIT-COVID Project

    22 7

  5. nCoV-Sandbox nCoV-Sandbox Public

    HTML 15 4

  6. ForecastFramework ForecastFramework Public

    Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create mode…

    R 12 4

Repositories

Showing 10 of 98 repositories
  • HopkinsIDD/ForecastHospBurden’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 19, 2025
  • flepiMoP Public

    The Flexible Epidemic Modeling Pipeline

    HopkinsIDD/flepiMoP’s past year of commit activity
    HTML 9 GPL-3.0 4 164 (9 issues need help) 3 Updated Mar 19, 2025
  • rsv-forecast-hub Public

    US RSV Forecast Hub

    HopkinsIDD/rsv-forecast-hub’s past year of commit activity
    R 11 MIT 13 3 9 Updated Mar 14, 2025
  • OutbreakExtractR Public

    R package to extract outbreaks from surveillance data according to a standardized outbreak definition. Originally tailored for cholera surveillance data from https://cholera-taxonomy.middle-distance.com/

    HopkinsIDD/OutbreakExtractR’s past year of commit activity
    R 0 GPL-3.0 0 0 1 Updated Mar 14, 2025
  • HopkinsIDD/hev-diagnostics-bentiu’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Mar 12, 2025
  • HopkinsIDD/CholeraGenomics-AfricaSE’s past year of commit activity
    0 0 0 0 Updated Mar 3, 2025
  • cholera-mapping-pipeline Public

    Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure

    HopkinsIDD/cholera-mapping-pipeline’s past year of commit activity
    HTML 1 3 122 4 Updated Feb 25, 2025
  • rsv-forecast-hub_website Public

    RSV Forcast Hub website repo

    HopkinsIDD/rsv-forecast-hub_website’s past year of commit activity
    HTML 0 1 40 0 Updated Feb 11, 2025
  • mpox_cladeIb_incubation_period Public

    Code for the estimation period of the incubation period of MPXV clade Ib

    HopkinsIDD/mpox_cladeIb_incubation_period’s past year of commit activity
    R 3 0 0 0 Updated Feb 10, 2025
  • kOCV-review Public
    HopkinsIDD/kOCV-review’s past year of commit activity
    R 0 0 0 0 Updated Jan 11, 2025