Infectious Disease Dynamics Group at Johns Hopkins University
- 34 followers
- Baltimore, Maryland, USA
- http://iddynamics.jhsph.edu/
- azman@jhu.edu
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COVIDScenarioPipeline
COVIDScenarioPipeline Public archivePublic shared code for doing scenario forecasting and creating reports for various governmental entities.
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ncov_incubation
ncov_incubation PublicEstimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools
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covidRTPCR
covidRTPCR PublicAnalysis of RT-PCR sensitivity by day since exposure or symptom onset
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ForecastFramework
ForecastFramework PublicCreate modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create mode…
Repositories
- ForecastHospBurden Public
HopkinsIDD/ForecastHospBurden’s past year of commit activity - OutbreakExtractR Public
R package to extract outbreaks from surveillance data according to a standardized outbreak definition. Originally tailored for cholera surveillance data from https://cholera-taxonomy.middle-distance.com/
HopkinsIDD/OutbreakExtractR’s past year of commit activity - hev-diagnostics-bentiu Public
HopkinsIDD/hev-diagnostics-bentiu’s past year of commit activity - CholeraGenomics-AfricaSE Public
HopkinsIDD/CholeraGenomics-AfricaSE’s past year of commit activity - cholera-mapping-pipeline Public
Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
HopkinsIDD/cholera-mapping-pipeline’s past year of commit activity - mpox_cladeIb_incubation_period Public
Code for the estimation period of the incubation period of MPXV clade Ib
HopkinsIDD/mpox_cladeIb_incubation_period’s past year of commit activity - kOCV-review Public
HopkinsIDD/kOCV-review’s past year of commit activity
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