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- This pipeline is based on nextflow. As we have several nextflow pipelines, we have centralized the common information in the IARC-nf repository. Please read it carefully as it contains essential information for the installation, basic usage and configuration of nextflow and our pipelines.
- External software:
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You can avoid installing all the external software by only installing Docker. See the IARC-nf repository for more information.
| Type | Description |
|---|---|
| input1 | ...... |
| input2 | ...... |
Specify the test files location
| Name | Example value | Description |
|---|---|---|
| --param1 | xx | ...... |
| --param2 | xx | ...... |
| Name | Default value | Description |
|---|---|---|
| --param3 | xx | ...... |
| --param4 | xx | ...... |
Flags are special parameters without value.
| Name | Description |
|---|---|
| --help | Display help |
| --flag2 | .... |
...
| Type | Description |
|---|---|
| output1 | ...... |
| output2 | ...... |
...
| Name | Description | |
|---|---|---|
| contrib1* | xx | Developer to contact for support (link to specific gitter chatroom) |
| contrib2 | xx | Developer |
| contrib3 | xx | Tester |