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maint: require amici<1.0.0 #1618

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Merged
dweindl merged 2 commits into from
Oct 10, 2025
Merged

maint: require amici<1.0.0 #1618

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maint: require amici<1.0.0
dweindl Oct 6, 2025
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dweindl Oct 9, 2025
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2 changes: 1 addition & 1 deletion setup.cfg
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Original file line number Diff line number Diff line change
Expand Up @@ -92,7 +92,7 @@ all_optimizers =
%(pyswarms)s
%(fides)s
amici =
amici >= 0.21.0
amici >= 0.21.0, < 1.0.0
roadrunner =
libroadrunner >= 2.7.0
%(petab)s
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9 changes: 5 additions & 4 deletions tox.ini
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Expand Up @@ -77,14 +77,15 @@ description =
Test basic functionality on Windows

[testenv:petab]
extras = test,petab,pyswarm,roadrunner
extras = test,petab,pyswarm,roadrunner,amici
deps =
git+https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab.git@master\#subdirectory=src/python
# always install amici from main branch, avoid caching
# to skip re-installation, run `tox -e petab --override testenv:petab.commands_pre=`
commands_pre =
python3 -m pip uninstall -y amici
python3 -m pip install git+https://github.com/AMICI-dev/amici.git@main\#egg=amici&subdirectory=python/sdist
# TODO: once amici 1.0 is out, re-enable the following lines and remove "amici" from extras
# commands_pre =
# python3 -m pip uninstall -y amici
# python3 -m pip install git+https://github.com/AMICI-dev/amici.git@main\#egg=amici&subdirectory=python/sdist
commands =
# FIXME: Until we have proper PEtab v2 import
# we need `10ffb050380933b60ac192962bf9550a9df65a9c`
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