TumorType-WGS

Classifying tumor types based on Whole Genome Sequencing (WGS) data. A web version of the model where vcf files can be uploaded and predict cancer types can be found at: DeepTumour

Training RF Models

$ Rscript train_models.R <dataType> <cancerType>

dataType is one of: SNV, SV, CNV, MUT, GEN, PTW, IND cancerType is one of the 24 cancer types.

Training DNN Models

$ python train_models_tumour_classifier.py <fold> <path/to/features>