Fix from pyenzyme #20
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- Updated import for EnzymeMLDocument to use read_enzymeml function. - Added error handling for unsupported file formats, raising ValueError for unknown formats and NotImplementedError for OMEX files. - Enhanced model validation by raising ValueError if the provided model is not of type Model. - Changed model parameter to be optional in the plotting function.
- Changed the model parameter in the plot function to be optional. - Reduced the font size of the plot title for better visual consistency.
- Updated the import statement for EnzymeMLDocument to include read_enzymeml. - Refactored the from_enzymeml method to accept an EnzymeMLDocument directly. - Added a new read_enzymeml class method for initializing a model from an EnzymeML document. - Improved error handling for equation input in add_ode method, ensuring it accepts either a string or a SymPy expression. - Adjusted species addition logic in add_ode to handle species mapping more effectively.
- Organized import statements for clarity and consistency. - Added __all__ to specify public API for the mcmc module, including run_mcmc, plotting functions, and priors.
…rameters - Added warnings handling to suppress UserWarnings during plotting. Due to layout control in corner.corner API. - Introduced a new parameter, digits_after_decimal, to customize the number of decimal places in plot titles. - Updated function documentation to reflect changes in parameters and return type.
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Modelwith if statement