Tuple-pattern return, snake_case fields, SMLMData 0.7#11
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Breaking changes: - Requires SMLMData ≥0.6 (adds σ_xy field to Emitter2DFit) - clusterdata column layout changed: added σ_xy as column 5 Covariance propagation: - create_costmatrix: Mahalanobis distance for separation cost, ellipse area π√det(Σ) for localization uncertainty - estimatedensities: Precision-weighted cluster centers with full 2x2 covariance matrix - combinelocalizations: Full 2x2 matrix math for combining localizations, outputs proper σ_xy_combined All 96 tests pass. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
BREAKING: frameconnect() now returns (combined, info) instead of NamedTuple - Add ConnectInfo struct with track assignments and algorithm metadata - Capture timing with elapsed_ns field - Include n_input, n_tracks, n_combined, n_preclusters counts - Rate parameters (k_on, k_off, k_bleach, p_miss) accessible via info - Update all tests, examples, and documentation - Bump version to 0.4.0 Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add ConnectConfig with @kwdef for algorithm parameters - Support both calling conventions: - frameconnect(smld, config::ConnectConfig) - frameconnect(smld; kwargs...) forwards to config form - Export ConnectConfig from module - All 115 tests pass Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- README: Add Configuration section with kwargs and config struct examples - api_overview: Add ConnectConfig type, update frameconnect signatures Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
ConnectConfig <: AbstractSMLMConfig, ConnectInfo <: AbstractSMLMInfo from SMLMData v0.6.0 (feature/tuple-pattern c366f68). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…ctInfo Namespace-qualified type names across struct definitions, exports, tests, docs, README, and api_overview.md. Zero old names remain. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Remove dev/path dependency override. SMLMData now resolves from General registry as v0.7.0 (requires AbstractSMLMConfig/Info types). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Renames: nnearestclusters→n_density_neighbors, nsigmadev→max_sigma_dist, maxframegap→max_frame_gap, nmaxnn→max_neighbors, initialdensity→initial_density. Also removes redundant `using SMLMData` from doc examples (re-exported). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
actions/cache v1 was deprecated by GitHub, causing immediate CI failures. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
kalidke
referenced
this pull request
Feb 9, 2026
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Summary
(combined, info)tuple fromframeconnect()withFrameConnectInfometadata structConnectConfig/ConnectInfotoFrameConnectConfig/FrameConnectInfoinheriting from SMLMData abstract typesnnearestclusters→n_density_neighbors,nsigmadev→max_sigma_dist,maxframegap→max_frame_gap,nmaxnn→max_neighbors,initialdensity→initial_densityσ_xysupportTest plan
FrameConnectConfig(max_frame_gap=10, max_sigma_dist=3.0)🤖 Generated with Claude Code