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@Kuonirad Kuonirad commented Sep 9, 2025

feat: Complete rewrite of physics engine and solvers

This commit combines all the recent work to correct the repository's
foundational issues and implement new, user-specified models. It
replaces multiple flawed modules with correct, verifiable, and
well-documented code.

The changes include:

  1. Core Physics Correction:

    • The enhanced_hamiltonian in src/advanced_quantum_simulation.py
      has been corrected to use the physically sound unitary dressing
      transformation (Ĉ Ĥ₀ Ĉ†) instead of an incorrect additive form.
    • The "Rhythmic Balanced Interchange" term (Ĥ_RB(t)) has been
      corrected to be a proper, operator-valued term, resolving the
      original dimensional analysis errors.
  2. Quantum Chemistry Solver Rewrite:

    • The old, critically flawed solver modules (quantum_solver.py,
      hybrid_solver.py, molecular_hamiltonian.py) have been deleted.
    • A new, correct solver has been implemented from scratch in
      src/electronic_structure_solver.py using the industry-standard
      qiskit-nature library. This ensures the underlying physics and
      mathematics are robust and correct.
  3. New QFT "Cosmic Duality" Simulation:

    • Based on user selection, a new simulation has been added to model
      the concepts of "Generation" and "Radiation".
    • This is implemented with the Hamiltonian H = ε(a†a) + g(a + a†)
      using creation and annihilation operators, which directly models
      the creation and destruction of particles from a vacuum.
    • A new run script (src/run_qft_simulation.py) and visualization
      have been added to demonstrate this "two-way motion".
  4. Major Code Refactoring and Testing:

    • The codebase has been significantly refactored to separate concerns,
      with distinct modules for core physics, the QHR model, visualization,
      and the new solvers.
    • New, rigorous test suites have been added for both the corrected
      "Russell" physics and the new QFT model, verifying properties like
      Hermiticity and correctness against known analytical results.
  5. Documentation and Dependency Updates:

    • The README.md has been extensively updated to reflect all new
      models and corrections.
    • requirements.txt has been updated to include all necessary
      dependencies for the new implementations.

This commit introduces a new simulation based on Quantum Field Theory (QFT)
to model the user's concept of "Cosmic Duality" as a two-way process of
creation and annihilation.

This work was the result of a research and synthesis phase where standard
physics models were investigated as analogies for Walter Russell's
cosmogony. The user selected the QFT model over a driven two-level
system.

The implementation includes:
1.  A new function `construct_qft_hamiltonian` in
    `src/advanced_quantum_simulation.py` that builds the Hamiltonian
    `H = ε(a†a) + g(a† + a)` using creation and annihilation operators
    in a truncated Fock space.

2.  A new script `src/run_qft_simulation.py` that runs the simulation
    from a vacuum state and plots the expectation value of the particle
    number over time, providing a clear visualization of the creation
    and annihilation dynamics.

3.  A new test suite `tests/test_qft_simulation.py` that verifies the
    Hermiticity of the Hamiltonian and confirms its eigenvalues match
    the theoretical values in the non-interacting (g=0) case.

4.  Updated documentation in `README.md` describing the new model, its
    physical interpretation, and instructions on how to run the
    simulation.
This commit combines all the recent work to correct the repository's
foundational issues and implement new, user-specified models. It
replaces multiple flawed modules with correct, verifiable, and
well-documented code.

The changes include:

1.  **Core Physics Correction:**
    - The `enhanced_hamiltonian` in `src/advanced_quantum_simulation.py`
      has been corrected to use the physically sound unitary dressing
      transformation (`Ĉ Ĥ₀ Ĉ†`) instead of an incorrect additive form.
    - The "Rhythmic Balanced Interchange" term (`Ĥ_RB(t)`) has been
      corrected to be a proper, operator-valued term, resolving the
      original dimensional analysis errors.

2.  **Quantum Chemistry Solver Rewrite:**
    - The old, critically flawed solver modules (`quantum_solver.py`,
      `hybrid_solver.py`, `molecular_hamiltonian.py`) have been deleted.
    - A new, correct solver has been implemented from scratch in
      `src/electronic_structure_solver.py` using the industry-standard
      `qiskit-nature` library. This ensures the underlying physics and
      mathematics are robust and correct.

3.  **New QFT "Cosmic Duality" Simulation:**
    - Based on user selection, a new simulation has been added to model
      the concepts of "Generation" and "Radiation".
    - This is implemented with the Hamiltonian `H = ε(a†a) + g(a + a†)`
      using creation and annihilation operators, which directly models
      the creation and destruction of particles from a vacuum.
    - A new run script (`src/run_qft_simulation.py`) and visualization
      have been added to demonstrate this "two-way motion".

4.  **Major Code Refactoring and Testing:**
    - The codebase has been significantly refactored to separate concerns,
      with distinct modules for core physics, the QHR model, visualization,
      and the new solvers.
    - New, rigorous test suites have been added for both the corrected
      "Russell" physics and the new QFT model, verifying properties like
      Hermiticity and correctness against known analytical results.

5.  **Documentation and Dependency Updates:**
    - The `README.md` has been extensively updated to reflect all new
      models and corrections.
    - `requirements.txt` has been updated to include all necessary
      dependencies for the new implementations.
This commit combines all the recent work to correct the repository's
foundational issues and implement new, user-specified models. It
replaces multiple flawed modules with correct, verifiable, and
well-documented code.

The changes include:

1.  **Core Physics Correction:**
    - The `enhanced_hamiltonian` in `src/advanced_quantum_simulation.py`
      has been corrected to use the physically sound unitary dressing
      transformation (`Ĉ Ĥ₀ Ĉ†`) instead of an incorrect additive form.
    - The "Rhythmic Balanced Interchange" term (`Ĥ_RB(t)`) has been
      corrected to be a proper, operator-valued term, resolving the
      original dimensional analysis errors.

2.  **Quantum Chemistry Solver Rewrite:**
    - The old, critically flawed solver modules (`quantum_solver.py`,
      `hybrid_solver.py`, `molecular_hamiltonian.py`) have been deleted.
    - A new, correct solver has been implemented from scratch in
      `src/electronic_structure_solver.py` using the industry-standard
      `qiskit-nature` library. This ensures the underlying physics and
      mathematics are robust and correct.

3.  **New QFT "Cosmic Duality" Simulation:**
    - Based on user selection, a new simulation has been added to model
      the concepts of "Generation" and "Radiation".
    - This is implemented with the Hamiltonian `H = ε(a†a) + g(a + a†)`
      using creation and annihilation operators, which directly models
      the creation and destruction of particles from a vacuum.
    - A new run script (`src/run_qft_simulation.py`) and visualization
      have been added to demonstrate this "two-way motion".

4.  **Major Code Refactoring and Testing:**
    - The codebase has been significantly refactored to separate concerns,
      with distinct modules for core physics, the QHR model, visualization,
      and the new solvers.
    - New, rigorous test suites have been added for both the corrected
      "Russell" physics and the new QFT model, verifying properties like
      Hermiticity and correctness against known analytical results.

5.  **Documentation and Dependency Updates:**
    - The `README.md` has been extensively updated to reflect all new
      models and corrections.
    - `requirements.txt` has been updated to include all necessary
      dependencies for the new implementations.
@Kuonirad Kuonirad self-assigned this Sep 9, 2025
@Kuonirad Kuonirad closed this Sep 9, 2025
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