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Merged
artdotlis merged 3 commits into from
Feb 18, 2026
Merged

Virus domain #58

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0c5e192
fix(taxon): correct ACELLULAR ROOT mapping
artdotlis Feb 18, 2026
7028108
chore(pyproject): bump project version to 1.1.5 and update dependencies
artdotlis Feb 18, 2026
b64938c
bump: release 0.9.30
artdotlis Feb 18, 2026
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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## v0.9.30 (2026-02-18)

### Fix

- **taxon**: correct ACELLULAR ROOT mapping

## v0.9.29 (2026-01-14)

### Fix
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2 changes: 1 addition & 1 deletion README.md
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# Strain Authentication and Identification Methods - saim

[![release: 0.9.29](https://img.shields.io/badge/rel-0.9.29-blue.svg?style=flat-square)](https://github.com/LeibnizDSMZ/saim.git)
[![release: 0.9.30](https://img.shields.io/badge/rel-0.9.30-blue.svg?style=flat-square)](https://github.com/LeibnizDSMZ/saim.git)
[![MIT LICENSE](https://img.shields.io/badge/License-MIT-brightgreen.svg?style=flat-square)](https://choosealicense.com/licenses/mit/)
[![Documentation Status](https://img.shields.io/badge/docs-GitHub-blue.svg?style=flat-square)](https://LeibnizDSMZ.github.io/saim/)

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190 changes: 92 additions & 98 deletions configs/dev/requirements.dev.txt
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73 changes: 40 additions & 33 deletions configs/dev/requirements.docs.txt
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@@ -1,17 +1,17 @@
# This file was autogenerated by uv via the following command:
# uv export --frozen --only-group docs --format requirements.txt
babel==2.17.0 \
--hash=sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d \
--hash=sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2
babel==2.18.0 \
--hash=sha256:b80b99a14bd085fcacfa15c9165f651fbb3406e66cc603abf11c5750937c992d \
--hash=sha256:e2b422b277c2b9a9630c1d7903c2a00d0830c409c59ac8cae9081c92f1aeba35
# via mkdocs-material
backrefs==6.1 \
--hash=sha256:13eafbc9ccd5222e9c1f0bec563e6d2a6d21514962f11e7fc79872fd56cbc853 \
--hash=sha256:2a2ccb96302337ce61ee4717ceacfbf26ba4efb1d55af86564b8bbaeda39cac1 \
--hash=sha256:3bba1749aafe1db9b915f00e0dd166cba613b6f788ffd63060ac3485dc9be231 \
--hash=sha256:4c9d3dc1e2e558965202c012304f33d4e0e477e1c103663fd2c3cc9bb18b0d05 \
--hash=sha256:a9e99b8a4867852cad177a6430e31b0f6e495d65f8c6c134b68c14c3c95bf4b0 \
--hash=sha256:c64698c8d2269343d88947c0735cb4b78745bd3ba590e10313fbf3f78c34da5a \
--hash=sha256:e82bba3875ee4430f4de4b6db19429a27275d95a5f3773c57e9e18abc23fd2b7
backrefs==6.2 \
--hash=sha256:08aa7fae530c6b2361d7bdcbda1a7c454e330cc9dbcd03f5c23205e430e5c3be \
--hash=sha256:0fdc7b012420b6b144410342caeb8adc54c6866cf12064abc9bb211302e496f8 \
--hash=sha256:12df81596ab511f783b7d87c043ce26bc5b0288cf3bb03610fe76b8189282b2b \
--hash=sha256:664e33cd88c6840b7625b826ecf2555f32d491800900f5a541f772c485f7cda7 \
--hash=sha256:c3f4b9cb2af8cda0d87ab4f57800b57b95428488477be164dd2b47be54db0c90 \
--hash=sha256:e5f805ae09819caa1aa0623b4a83790e7028604aa2b8c73ba602c4454e665de7 \
--hash=sha256:f44ff4d48808b243b6c0cdc6231e22195c32f77046018141556c66f8bab72a49
# via mkdocs-material
certifi==2026.1.4 \
--hash=sha256:9943707519e4add1115f44c2bc244f782c0249876bf51b6599fee1ffbedd685c \
Expand Down Expand Up @@ -62,17 +62,24 @@ colorama==0.4.6 \
--hash=sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6
# via
# click
# griffe
# griffecli
# mkdocs
# mkdocs-material
ghp-import==2.1.0 \
--hash=sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619 \
--hash=sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343
# via mkdocs
griffe==1.15.0 \
--hash=sha256:6f6762661949411031f5fcda9593f586e6ce8340f0ba88921a0f2ef7a81eb9a3 \
--hash=sha256:7726e3afd6f298fbc3696e67958803e7ac843c1cfe59734b6251a40cdbfb5eea
griffe==2.0.0 \
--hash=sha256:5418081135a391c3e6e757a7f3f156f1a1a746cc7b4023868ff7d5e2f9a980aa
# via mkdocstrings-python
griffecli==2.0.0 \
--hash=sha256:9f7cd9ee9b21d55e91689358978d2385ae65c22f307a63fb3269acf3f21e643d
# via griffe
griffelib==2.0.0 \
--hash=sha256:01284878c966508b6d6f1dbff9b6fa607bc062d8261c5c7253cb285b06422a7f
# via
# griffe
# griffecli
idna==3.11 \
--hash=sha256:771a87f49d9defaf64091e6e6fe9c18d4833f140bd19464795bc32d966ca37ea \
--hash=sha256:795dafcc9c04ed0c1fb032c2aa73654d8e8c5023a7df64a53f39190ada629902
Expand All @@ -84,9 +91,9 @@ jinja2==3.1.6 \
# mkdocs
# mkdocs-material
# mkdocstrings
markdown==3.10 \
--hash=sha256:37062d4f2aa4b2b6b32aefb80faa300f82cc790cb949a35b8caede34f2b68c0e \
--hash=sha256:b5b99d6951e2e4948d939255596523444c0e677c669700b1d17aa4a8a464cb7c
markdown==3.10.2 \
--hash=sha256:994d51325d25ad8aa7ce4ebaec003febcce822c3f8c911e3b17c52f7f589f950 \
--hash=sha256:e91464b71ae3ee7afd3017d9f358ef0baf158fd9a298db92f1d4761133824c36
# via
# mkdocs
# mkdocs-autorefs
Expand Down Expand Up @@ -157,9 +164,9 @@ mkdocs==1.6.1 \
# mkdocs-autorefs
# mkdocs-material
# mkdocstrings
mkdocs-autorefs==1.4.3 \
--hash=sha256:469d85eb3114801d08e9cc55d102b3ba65917a869b893403b8987b601cf55dc9 \
--hash=sha256:beee715b254455c4aa93b6ef3c67579c399ca092259cc41b7d9342573ff1fc75
mkdocs-autorefs==1.4.4 \
--hash=sha256:834ef5408d827071ad1bc69e0f39704fa34c7fc05bc8e1c72b227dfdc5c76089 \
--hash=sha256:d54a284f27a7346b9c38f1f852177940c222da508e66edc816a0fa55fc6da197
# via
# mkdocstrings
# mkdocstrings-python
Expand All @@ -181,29 +188,29 @@ mkdocstrings==1.0.0 \
mkdocstrings-python==2.0.1 \
--hash=sha256:66ecff45c5f8b71bf174e11d49afc845c2dfc7fc0ab17a86b6b337e0f24d8d90 \
--hash=sha256:843a562221e6a471fefdd4b45cc6c22d2607ccbad632879234fa9692e9cf7732
packaging==25.0 \
--hash=sha256:29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484 \
--hash=sha256:d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f
packaging==26.0 \
--hash=sha256:00243ae351a257117b6a241061796684b084ed1c516a08c48a3f7e147a9d80b4 \
--hash=sha256:b36f1fef9334a5588b4166f8bcd26a14e521f2b55e6b9de3aaa80d3ff7a37529
# via mkdocs
paginate==0.5.7 \
--hash=sha256:22bd083ab41e1a8b4f3690544afb2c60c25e5c9a63a30fa2f483f6c60c8e5945 \
--hash=sha256:b885e2af73abcf01d9559fd5216b57ef722f8c42affbb63942377668e35c7591
# via mkdocs-material
pathspec==1.0.3 \
--hash=sha256:bac5cf97ae2c2876e2d25ebb15078eb04d76e4b98921ee31c6f85ade8b59444d \
--hash=sha256:e80767021c1cc524aa3fb14bedda9c34406591343cc42797b386ce7b9354fb6c
pathspec==1.0.4 \
--hash=sha256:0210e2ae8a21a9137c0d470578cb0e595af87edaa6ebf12ff176f14a02e0e645 \
--hash=sha256:fb6ae2fd4e7c921a165808a552060e722767cfa526f99ca5156ed2ce45a5c723
# via mkdocs
platformdirs==4.5.1 \
--hash=sha256:61d5cdcc6065745cdd94f0f878977f8de9437be93de97c1c12f853c9c0cdcbda \
--hash=sha256:d03afa3963c806a9bed9d5125c8f4cb2fdaf74a55ab60e5d59b3fde758104d31
platformdirs==4.9.2 \
--hash=sha256:9170634f126f8efdae22fb58ae8a0eaa86f38365bc57897a6c4f781d1f5875bd \
--hash=sha256:9a33809944b9db043ad67ca0db94b14bf452cc6aeaac46a88ea55b26e2e9d291
# via mkdocs-get-deps
pygments==2.19.2 \
--hash=sha256:636cb2477cec7f8952536970bc533bc43743542f70392ae026374600add5b887 \
--hash=sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b
# via mkdocs-material
pymdown-extensions==10.20 \
--hash=sha256:5c73566ab0cf38c6ba084cb7c5ea64a119ae0500cce754ccb682761dfea13a52 \
--hash=sha256:ea9e62add865da80a271d00bfa1c0fa085b20d133fb3fc97afdc88e682f60b2f
pymdown-extensions==10.21 \
--hash=sha256:39f4a020f40773f6b2ff31d2cd2546c2c04d0a6498c31d9c688d2be07e1767d5 \
--hash=sha256:91b879f9f864d49794c2d9534372b10150e6141096c3908a455e45ca72ad9d3f
# via
# mkdocs-material
# mkdocstrings
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30 changes: 15 additions & 15 deletions configs/dev/requirements.test.txt
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@@ -1,8 +1,8 @@
# This file was autogenerated by uv via the following command:
# uv export --frozen --only-group test --format requirements.txt
cachetools==6.2.4 \
--hash=sha256:69a7a52634fed8b8bf6e24a050fb60bff1c9bd8f6d24572b99c32d4e71e62a51 \
--hash=sha256:82c5c05585e70b6ba2d3ae09ea60b79548872185d2f24ae1f2709d37299fd607
cachetools==7.0.1 \
--hash=sha256:8f086515c254d5664ae2146d14fc7f65c9a4bce75152eb247e5a9c5e6d7b2ecf \
--hash=sha256:e31e579d2c5b6e2944177a0397150d312888ddf4e16e12f1016068f0c03b8341
# via tox
chardet==5.2.0 \
--hash=sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7 \
Expand Down Expand Up @@ -73,26 +73,26 @@ distlib==0.4.0 \
--hash=sha256:9659f7d87e46584a30b5780e43ac7a2143098441670ff0a49d5f9034c54a6c16 \
--hash=sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d
# via virtualenv
filelock==3.20.3 \
--hash=sha256:18c57ee915c7ec61cff0ecf7f0f869936c7c30191bb0cf406f1341778d0834e1 \
--hash=sha256:4b0dda527ee31078689fc205ec4f1c1bf7d56cf88b6dc9426c4f230e46c2dce1
filelock==3.24.2 \
--hash=sha256:667d7dc0b7d1e1064dd5f8f8e80bdac157a6482e8d2e02cd16fd3b6b33bd6556 \
--hash=sha256:c22803117490f156e59fafce621f0550a7a853e2bbf4f87f112b11d469b6c81b
# via
# tox
# virtualenv
iniconfig==2.3.0 \
--hash=sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730 \
--hash=sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12
# via pytest
packaging==25.0 \
--hash=sha256:29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484 \
--hash=sha256:d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f
packaging==26.0 \
--hash=sha256:00243ae351a257117b6a241061796684b084ed1c516a08c48a3f7e147a9d80b4 \
--hash=sha256:b36f1fef9334a5588b4166f8bcd26a14e521f2b55e6b9de3aaa80d3ff7a37529
# via
# pyproject-api
# pytest
# tox
platformdirs==4.5.1 \
--hash=sha256:61d5cdcc6065745cdd94f0f878977f8de9437be93de97c1c12f853c9c0cdcbda \
--hash=sha256:d03afa3963c806a9bed9d5125c8f4cb2fdaf74a55ab60e5d59b3fde758104d31
platformdirs==4.9.2 \
--hash=sha256:9170634f126f8efdae22fb58ae8a0eaa86f38365bc57897a6c4f781d1f5875bd \
--hash=sha256:9a33809944b9db043ad67ca0db94b14bf452cc6aeaac46a88ea55b26e2e9d291
# via
# tox
# virtualenv
Expand All @@ -116,7 +116,7 @@ pytest==9.0.2 \
tox==4.34.1 \
--hash=sha256:5610d69708bab578d618959b023f8d7d5d3386ed14a2392aeebf9c583615af60 \
--hash=sha256:ef1e82974c2f5ea02954d590ee0b967fad500c3879b264ea19efb9a554f3cc60
virtualenv==20.36.1 \
--hash=sha256:575a8d6b124ef88f6f51d56d656132389f961062a9177016a50e4f507bbcc19f \
--hash=sha256:8befb5c81842c641f8ee658481e42641c68b5eab3521d8e092d18320902466ba
virtualenv==20.37.0 \
--hash=sha256:5d3951c32d57232ae3569d4de4cc256c439e045135ebf43518131175d9be435d \
--hash=sha256:6f7e2064ed470aa7418874e70b6369d53b66bcd9e9fd5389763e96b6c94ccb7c
# via tox
2 changes: 1 addition & 1 deletion pyproject.toml
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@@ -1,6 +1,6 @@
[project]
name = "saim"
version = "0.9.29"
version = "0.9.30"
description = """A library for identifying strains."""
readme = "README.md"
authors = [
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