The goal of UCSCXenaShiny is to provide a web app for downloading, analyzing and visualizing datasets from UCSC Xena, which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
Please cite the following article when using UCSCXenaShiny:
Wang, S.; Xiong, Y.; Gu, K.; Zhao, L.; Li, Y.; Zhao, F.; Li, X.; Liu, X. UCSCXenaShiny: An R Package for Exploring and Analyzing UCSC Xena Public Datasets in Web Browser. Preprints 2020, 2020070179 (doi: 10.20944/preprints202007.0179.v1).
You can install stable release of UCSCXenaShiny from CRAN with:
install.packages("UCSCXenaShiny")You can install the development version of UCSCXenaShiny from Github with:
remotes::install_github("openbiox/XenaShiny")First load package:
library(UCSCXenaShiny)Then run the following command in console:
app_run()MIT © Openbiox