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Utilities for handling single-cell droplet datasets

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BioC-release Release OK
BioC-devel Devel OK

The DropletUtils package provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix. Check out the Bioconductor landing page for more details.

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Clone of the Bioconductor repository for the DropletUtils package.

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