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  1. MarkBarsoumMarkarian MarkBarsoumMarkarian Public

    GitHub profile README

    7

  2. RNA-harmonization-AI RNA-harmonization-AI Public

    Batch-harmonized ML framework for cross-cohort RNA biomarker discovery in pancreatic adenocarcinoma — bioRxiv 2025 (doi:10.1101/2025.11.14.688421)

    R 6

  3. GPRC5A-paradox-PDAC GPRC5A-paradox-PDAC Public

    Resolving the GPRC5A prognostic paradox in PDAC: subtype stratification, treatment deconfounding, proteomics, AlphaFold2, ML (R) — manuscript in prep

    R 4

  4. miRNA-diagnostic-platform miRNA-diagnostic-platform Public

    R Shiny platform for miRNA qPCR analysis in renal cell carcinoma: ΔΔCt normalization, geNorm stability, Wilcoxon testing, ROC-AUC, elastic net multi-miRNA classifier

    4

  5. kidney-fibrosis-grader kidney-fibrosis-grader Public

    ResNet-FPN deep learning classifier for kidney biopsy fibrosis grading (4 classes) with AI-generated pathology reports via LLM — Streamlit app

    Python 6

  6. TCGA-KIRC-vs-KIRP-miRNA-Random-Forest-Classifier TCGA-KIRC-vs-KIRP-miRNA-Random-Forest-Classifier Public

    Random Forest classifier for kidney cancer subtype discrimination (KIRC vs KIRP) using TCGA miRNA expression — includes preprocessing, DEA, ROC evaluation (R)

    Jupyter Notebook 1