Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Issue:
maxatac predictexpects the following column names in a cutoff file:However,
maxatac thresholdoutputs a file with the following column names:When these columns are not available,
maxatac predictwill not output a BED file of TFBS predictions, even when a cutoff file and type are specified by the user.Fix:
maxatac predict.I tested this change to ensure it works with v1.0.6 of maxATAC. A BED file of predictions is now outputted when a cutoff file and type are specified by the user.