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Updates to example-config.yaml, model_generator.py, run_experiment.py, simulator.py, requirements.txt, .gitignore, beeline-inputs-boolean.yaml. Reorganized genVis.py #15

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update .gitignore to include .sh and .out

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Updates to example-config.yaml, model_generator.py, run_experiment.py, simulator.py, requirements.txt, .gitignore, beeline-inputs-boolean.yaml. Reorganized genVis.py #15

update .gitignore to include .sh and .out
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