[vm-rewrite] Fix up sui-side tests #21178
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Fix a number of different things in order to get Sui-side tests passing:
* Handle including the system packages for all linkages outside of
system transactions (was missing this for publish and upgrade commands
where this is needed for the resolution of the upgrade cap and the
like).
* Handle typetags, and converting them to be runtime type tags before
flowing them into the VM (always). NB: still some work here in the
object runtime.
* Handle duplicate modules in packages. This is now an error when
constructing a `MovePackage` and previously it was an error in the VM.
However duplicate modules in package are no longer expressible in the
VM's public interface, so moving this into the Move package seemed
like the right place.
- Note for the future: This change may need to be protocol versioned
as it's a change outside of sui types, however I don't think we need
to version it since we will check this in the old VM before creating
the package, and therefore would never hit the new error with it.
* Change in graphql test is just a change in the order of the headers
and not a meaningful change.
* Ignored one test that is failing for an unrelated reason as far as I
can tell, once we do another rebase I'll re-enable and dig in to see
if there's still a problem with it.
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