Py_Modify #292
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Py_Modify #292
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mforootan
commented
Jan 27, 2021
mforootan
commented
- Make a new branch of gdc-docs, and modify any Python script that currently just prints to console so that it writes to a file.
- Add remarks explaining what the script does to the beginning of all of them (pretty much copy-pasting what's already in the documentation page into the script box).
- Make the sample file examples executable (so the user can simply copy-paste scripts, run, and see some output), as much as possible (using real examples); or clearly explain required changes.
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
Moving WGS information from the WXS documentation
Editing mkdocs
Portal vid - Add to tutorial page
Draft of DR42 Release Notes
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
Rearranged order and removed WGS variant project list
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
Co-authored-by: Bill Wysocki <[email protected]>
DR42 Release Notes
Changing dashes to asterisks
WGS Variant Documentation
…e_notes DOC-472 adds cohort comparison negative cases info
encoding fix
Attempting to fix encoding issues (no exact position provided in terminal output)
Fixing encoding issues
curly quote
-Removed all "Changes made to 'properties' " and backtabbed lines below -Removed all "Removed property: `deprecated` " -Removed "Removed property: `deprecated_enum` " (line 212) -Removed "Changes made to `deprecated_enum` " (Line 207) -Tabbed `weeks_gestation_at_birth` (Line 45)
-Removed 'deprecated' (line 132) -Deprecated format fixed for family_history (line 52)
-Edits to 'deprecated' sections -Removed properties that were "undeprecated"
Updated dates
Update Data_Dictionary_Release_Notes.md
- Family_history.relationship_sex_at_birth changed to `new` - Family_history.relationship_gender changed to `deprecated` - Diagnosis properties removed from pathology_detail - `morphology` moved to diagnosis - Follow_up.days_to_first_event removed from changelist - Removed analyte.analyte_type_id from changelist - `After Study Enrollment` and `Prior to Study Enrollment` added to timepoint_category as deprecated - 9385/3 and 9478/3 added as new morphology values - Removed 'deprecated' from follow_up entity - Added 'indeterminant' as a deprecated value to margin_status
Added the four removed properties to diagnosis
Moved `micropapillary_features`, `papillary_renal_cell_type` under diagnosis as removed
Update Data_Dictionary_Release_Notes.md
PEAR-2395 - Dictionary viewer, hide deprecated enums
PEAR-2415 - Dictionary Viewer “Center”, “Program” & “Tissue Source Site” nodes aren't loading for some scenarios
PEAR-2481 - Add breadcrumbs back to dictionary viewer
Added release notes and file list
changed file suffix to correct one
Added scRNA Tool - Video Tutorial
Embed link
…_links DOC-488: Updating outdated links
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