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Py_Modify #292

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Py_Modify #292

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mforootan
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  • Make a new branch of gdc-docs, and modify any Python script that currently just prints to console so that it writes to a file.
  • Add remarks explaining what the script does to the beginning of all of them (pretty much copy-pasting what's already in the documentation page into the script box).
  • Make the sample file examples executable (so the user can simply copy-paste scripts, run, and see some output), as much as possible (using real examples); or clearly explain required changes.

wwysoc2 and others added 30 commits June 26, 2024 12:37
Create troubleshooting guide for GDC data submission
Previously, the dictionary viewer was implememted as part of a custom theme. This does not appear
to be how mkdocs is intended to work. This PR moved the dict viewer into the docs directory,
which may not be completely idomatic either.

As of this commit, the dict viewer works again, but it's styling needs to be updated still.
Moving the gdcmvs app out of the custom theme and into the docs directory. The search app
loads and can retrieve results.  However, it displays incorrectly. Many of the styles
used in gdcmvs.md require bootstrap. probalby bootstrap v3. These styles will need to be redone.
Updating with Data Dictionary Links
Removed UNALLOWED_GENCODE_VERSION section
Adding back UNALLOWED_GENCODE_VERSION message
DOC-425 v2 Description for BCGSC miRNA Profiling, Birdseed, and BRASS workflows
wwysoc2 and others added 30 commits January 14, 2025 09:42
…e_notes

DOC-472 adds cohort comparison negative cases info
Attempting to fix encoding issues (no exact position provided in terminal output)
Another encoding error fix
Formatting changes + reverting WXS doc name
DR42 manifests + adding date
Updating link
Fixing URL again
Update Data_Release_Notes.md
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