NIAID BRC Codeathons
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- RDF-knowledge-graph-construction Public
Transforming Pathogen Data Network Resources to RDF using Large Language Models
NIAID-BRC-Codeathons/RDF-knowledge-graph-construction’s past year of commit activity - storyseq-sequence-narrative Public
Automating sequence identification and contextualization using BLAST, database queries, and LLM narrative synthesis to accelerate pathogen and AMR gene discovery
NIAID-BRC-Codeathons/storyseq-sequence-narrative’s past year of commit activity - pubmed-miner Public
Automated extraction of viral sequence features, mutations, and epitopes from PubMed literature using LLMs to accelerate outbreak response and genomic analysis
NIAID-BRC-Codeathons/pubmed-miner’s past year of commit activity - viral-phylogenetics Public
Optimizing protein language model to predict viral protein structures at scale
NIAID-BRC-Codeathons/viral-phylogenetics’s past year of commit activity - workflow-training-data-extraction Public
Creating structured question-answer training datasets from BRC resources and publications to train LLMs for bioinformatics workflow generation
NIAID-BRC-Codeathons/workflow-training-data-extraction’s past year of commit activity - ai-dataset-and-analysis-discovery Public
Enabling bench scientists to start with analysis goals and receive both relevant datasets and executable workflows—a complete path from question to execution.
NIAID-BRC-Codeathons/ai-dataset-and-analysis-discovery’s past year of commit activity - ai-co-scientist-protein-function Public
Extending the Co-Scientist framework to build reasoning agents for protein function prediction using CEPI and BV-BRC datasets for priority pathogens
NIAID-BRC-Codeathons/ai-co-scientist-protein-function’s past year of commit activity - hiperrag-literature-extraction Public
Leveraging high-performance retrieval-augmented generation to extract and curate structured biological data for CEPI priority pathogens from scientific literature
NIAID-BRC-Codeathons/hiperrag-literature-extraction’s past year of commit activity - rhea-workflow-automation Public
Extending the Rhea platform with MCP+RAG to enable automated workflow generation leveraging Galaxy and BV-BRC for infectious disease analysis
NIAID-BRC-Codeathons/rhea-workflow-automation’s past year of commit activity
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