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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Cleanup any new files made by notebook tests INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#748 opened Mar 11, 2025 by jstjohn Loading…
Adding bf16 fine-tuned variant of evo2 1b checkpoint
#747 opened Mar 11, 2025 by jstjohn Loading…
Evo2 modelcard documentation Improvements or additions to documentation SKIP_CI Completely skips the CI pipeline
#746 opened Mar 11, 2025 by jstjohn Loading…
1 of 5 tasks
@jstjohn
fix: attempts to update geneformer notebooks
#745 opened Mar 11, 2025 by jomitchellnv Loading…
9 tasks
D3pm blackwell testing stability fix INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#743 opened Mar 11, 2025 by nvdreidenbach Loading…
@nvdreidenbach
1
fix: removes BIONEMO_HOME from repository [JIRA-BIONEMO-482]
#742 opened Mar 10, 2025 by jomitchellnv • Queued
1 of 9 tasks
3
Geneformer gene embedding calculation
#741 opened Mar 10, 2025 by jyin-bst Loading…
2 of 9 tasks
2
Aligning directories with tensorboard logs for ESM2 and Evo2
#740 opened Mar 10, 2025 by dorotat-nv Loading…
1 of 9 tasks
8
Bump 3rdparty/Megatron-LM from 62529f1 to b1efb3c dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#738 opened Mar 10, 2025 by dependabot bot Loading…
Bump 3rdparty/NeMo from 0366d9d to 0c0d958 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#737 opened Mar 10, 2025 by dependabot bot Loading…
update evo2 partial conv max steps SKIP_CI Completely skips the CI pipeline
#736 opened Mar 10, 2025 by dorotat-nv Loading…
9 tasks
switch to GHA runners
#734 opened Mar 7, 2025 by pstjohn • Draft
3 tasks
Initial commits prepping for nv-gha-runners
#733 opened Mar 7, 2025 by pstjohn • Queued
10
xfail evo2 long context train test INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#732 opened Mar 7, 2025 by dorotat-nv Loading…
1 of 9 tasks
@dorotat-nv
1
reduced mem to 12gb
#730 opened Mar 7, 2025 by nvdreidenbach Loading…
1
Bump nemo version to have the 1b checkpoint fix
#729 opened Mar 6, 2025 by jstjohn • Queued
1
[cye/subpack-ci] Add sub-package build, test, and publish to OSS. (WORK IN PROGRESS - PENDING MORE SUB-PACKAGE COVERAGE)
#725 opened Mar 6, 2025 by cspades Loading…
1 of 5 tasks
@cspades
7
GTC Evo2 Demo Notebooks SKIP_CI Completely skips the CI pipeline
#724 opened Mar 6, 2025 by jwilber • Draft
[do not merge]inference with protein string on single gpu
#714 opened Mar 3, 2025 by yzhang123 • Draft
9 tasks
2
Correct Shape of scdl output matirx
#708 opened Feb 27, 2025 by Intron7 Loading…
10
[WIP] Blackwell compatibility changes
#707 opened Feb 27, 2025 by trvachov Loading…
9 tasks
1
add sample combiner for multi-GPU inference
#691 opened Feb 17, 2025 by Intron7 Loading…
2 of 9 tasks
Allow for multiline copyright licenses SKIP_CI Completely skips the CI pipeline
#690 opened Feb 14, 2025 by jwilber Loading…
1 of 9 tasks
1
CI hotfix: NGC access INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#683 opened Feb 7, 2025 by dorotat-nv Loading…
4 of 9 tasks
@dorotat-nv
3
draft: adding FIXME/XFAIL issue linter to pre commit hook SKIP_CI Completely skips the CI pipeline
#681 opened Feb 6, 2025 by dorotat-nv Loading…
1 of 9 tasks
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