v1.1.0 in master #613
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v1.1.0 in master #613
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Co-authored-by: Sylvain Chevallier <[email protected]>
Co-authored-by: Sylvain Chevallier <[email protected]>
Co-authored-by: Sylvain Chevallier <[email protected]>
* Adding cache option inside the evaluations * updating the whats_new.rst file
* fixing crop * changing the braindecode install * Adding cache option for the evaluation * Revert "Adding cache option for the evaluation" This reverts commit 72bbf17. * fixing the braindecode workflow
Update FTP link Co-authored-by: Bru <[email protected]> Co-authored-by: Sylvain Chevallier <[email protected]>
* fix: try to fix TRCA * fix: remove n_fbands as not used in filterbanks * fix: adapt filter * fix: correct ssvep example * enh: add whats new * enh: adding a check for update of whats new file * fix: correct filepath --------- Co-authored-by: Sylvain Chevallier <[email protected]>
* push test for channels interpolation * use mne interpolation * fix typing * fix get_paradigm * typo * constructor parameter `paradigm` can now be removed * fix filtered dataset * set interpolate_missing_channels to False by default * fix assert paradigm not passing * parameter incorreclty named * fix paradigm name * exclude stim channel * debug trace * A-B vs B-A set difference pb * fix event_list * fix montage error fix event list in tests * fix disabling montage * pop should be on info not raw object * typo * workaround ValueError: lowpass frequency 32.0 must be less than Nyquist (32.0) * do not forget to pick channels * remove fmin/fmax * fix Nyquist error * remove finnally block * log montage * use default montage 1005 is not available * fix type * add origin * fix reference error * debug * add new check on epochs length * dataset missing in get_data * invalid subject given * debug string * missing dereferencement * fix destructuring * some debug trace * debug string * debug string * additiona testing * warn epochs * debug info * fix syntax * inverse test * raw.copy missing * resample not accurate. Debug. * fix interpolate missing channel True when should be False * get_data directly from datasets * lint * Update bi_illiteracy.py * [pre-commit.ci] auto fixes from pre-commit.com hooks * missing modification * [pre-commit.ci] auto fixes from pre-commit.com hooks * Update whats_new.rst --------- Co-authored-by: Gregoire Cattan <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bru <[email protected]>
* Adding cache option inside the evaluations * Adding warning
* BIDS path: specify run index in run and run description in task This required to remove the paradigm that was specified via task * Update whats_new.rst * Use recording instead of task and reintroduce paradigm as task
* Creating K-Subjects out * Fixing the tqdm * [pre-commit.ci] auto fixes from pre-commit.com hooks * Removing code not use * Updating whats_new.rst * Fixing whats new * fixing again --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0) - [github.com/psf/black: 23.9.1 → 23.12.1](psf/black@23.9.1...23.12.1) - [github.com/PyCQA/isort: 5.12.0 → 5.13.2](PyCQA/isort@5.12.0...5.13.2) - [github.com/astral-sh/ruff-pre-commit: v0.0.292 → v0.1.9](astral-sh/ruff-pre-commit@v0.0.292...v0.1.9) - [github.com/adrienverge/yamllint.git: v1.32.0 → v1.33.0](https://github.com/adrienverge/yamllint.git/compare/v1.32.0...v1.33.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Sylvain Chevallier <[email protected]>
* Update braindecode to 0.8 * Simplify plot_braindecode.py * Update whats_new.rst * Update load_model.py * Remove unused code in examples * Update braindecode pipelines
* enhance augmented dataset * [pre-commit.ci] auto fixes from pre-commit.com hooks * update whats new --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Issue #503 Fix This fixes the issue where the "ModuleNotFoundError: No module named 'keras.layers.normalization'" issue when using TF 2.13. I tested it with TF 2.12 and nothing seemed to break. * [pre-commit.ci] auto fixes from pre-commit.com hooks * Fixed BatchNormalization position for pre-commit * Update whats_new.rst --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix trial duration in doc of Lee2019_SSVEP * Fix #Chan in doc of Lee2019_SSVEP
* Fix #Trials / class in doc of Lee2019_SSVEP (there are 25 trials/class/session and 2 sessions so 50 trials/class/subject) * Update whats_new.rst
* Create a dataset for CVEP and BurstVEP from Toulouse lab : can just give data * [pre-commit.ci] auto fixes from pre-commit.com hooks * Add CVEP and BurstVEP dataset from Castillos from Toulouse lab * [pre-commit.ci] auto fixes from pre-commit.com hooks * Update moabb/datasets/castillos2023.py Co-authored-by: Sylvain Chevallier <[email protected]> * Correcting several issues * Correcting several issues * Update BVEP class * [pre-commit.ci] auto fixes from pre-commit.com hooks --------- Co-authored-by: Sebastien VELUT <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Sébastien VELUT <[email protected]> Co-authored-by: Sylvain Chevallier <[email protected]>
* [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 23.12.1 → 24.3.0](psf/black@23.12.1...24.3.0) - [github.com/PyCQA/flake8: 6.1.0 → 7.0.0](PyCQA/flake8@6.1.0...7.0.0) - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.3.5](astral-sh/ruff-pre-commit@v0.1.9...v0.3.5) - [github.com/adrienverge/yamllint.git: v1.33.0 → v1.35.1](https://github.com/adrienverge/yamllint.git/compare/v1.33.0...v1.35.1) * [pre-commit.ci] auto fixes from pre-commit.com hooks --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix doc sosulski2019.py * Update dataset_summary.rst * Update whats_new.rst
* Fix cvep searchable in dataset_search (#554) * Fix docs and _add_stim_chhanel_trial Thielen2021 (#555) * Update whats_new * Add Thielen2015 dataset * [pre-commit.ci] auto fixes from pre-commit.com hooks * Update docs/source/dataset_summary.rst * Update docs/source/whats_new.rst * Update docs/source/whats_new.rst * Update docs/source/whats_new.rst * Update docs/source/whats_new.rst * Apply suggestions from code review * Move cVEP common functions to datasets.utils - Closes #564 * Update whats_new.rst --------- Co-authored-by: Jordy Thielen <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bru <[email protected]> Co-authored-by: PierreGtch <[email protected]> Co-authored-by: Pierre Guetschel <[email protected]>
…cription tables (#562) * fixing the issues * fixing the dataset doc * adding whats_new.rst * more typos * more typo * Apply suggestions from code review Co-authored-by: PierreGtch <[email protected]> * new dataset convention * new table * Add presentation rate to castillos2023.py * Update table of thielen2021.py #566 * Update table of thielen2015.py #566 * Update summary table #566 * Fix presentation rate thielen2015.py * Add codes to docstring tables #566 * Update whats_new.rst --------- Co-authored-by: PierreGtch <[email protected]> Co-authored-by: Pierre Guetschel <[email protected]>
* Fix code column of CastillosCVEP * Update whats_new.rst
* MAINT: Try to solve the tensorflow metal issue * re-generating the poetry.lock * re-generating the poetry.lock * updating the poetry again * strange issue with _fit_and_score * trying to solve the issue with sklearn * changing python version * removing test that is not working test on 3.9 * adding score_parameters * returning test * removing keras version info
* updating parameters * updating parameters * updating the whats_new.rst * updating number
… TRCA-SSVEP (#589) * expose learning rate * updating braidnecode methods * removing not used parameter * changing the whats new file
* Add SSVEP and ERP paradigms to DL pipelines * Update whats_new.rst
* flexibily in the optimizer * updating whats new file
* flexibily in the optimizer * updating whats new file * reverting X=
* add dataset * rename to Hinss2021 add channel info * complete documentation * [pre-commit.ci] auto fixes from pre-commit.com hooks * remove unnecessary comment * add example * add what's new * [pre-commit.ci] auto fixes from pre-commit.com hooks * correct small typo * Update whats_new.rst * Update docs/source/whats_new.rst Co-authored-by: Bru <[email protected]> * Update docs/source/whats_new.rst Co-authored-by: Bru <[email protected]> * Update examples/plot_Hinss2021_classification.py Co-authored-by: Bru <[email protected]> * Add more comments * add Hinss2021 to datasets.rst and data_summary.rst complete missing doc on paradigms.rst * [pre-commit.ci] auto fixes from pre-commit.com hooks * A few improvement and typo fixes * [pre-commit.ci] auto fixes from pre-commit.com hooks * markdown/rst formation, pep and fixing the table. * changing the init --------- Co-authored-by: Gregoire Cattan <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bru <[email protected]>
* exposing dropout rate * updating the whats new file
* Starting Stieger2021 * Starting Stieger2021 * removing pre-processing step. * Update docs/source/dataset_summary.rst * Update docs/source/dataset_summary.rst * Apply suggestions from code review
* push Pedro's implementation * complete constructor * Complete doc * fix bug with file location * rename on/off to closed/open * push example * fix example * minor refacto of the example * [pre-commit.ci] auto fixes from pre-commit.com hooks * what's new * typo * [pre-commit.ci] auto fixes from pre-commit.com hooks * remove examples * Fixing citation and table --------- Co-authored-by: Gregoire Cattan <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Bru <[email protected]>
* Starting Stieger2021 * Starting Stieger2021 * removing pre-processing step. * Update docs/source/dataset_summary.rst * Update docs/source/dataset_summary.rst * Apply suggestions from code review * Updating the whats_new.rst file Co-authored-by: rkobler <[email protected]> * small changes in the data path function Co-authored-by: rkobler <[email protected]> * mostly python convention and improve the msgs Co-authored-by: rkobler <[email protected]> * Drop constraint on interval and logging formatting * Update docs/source/whats_new.rst --------- Co-authored-by: rkobler <[email protected]> Co-authored-by: Reinmar Kobler <[email protected]>
* Fix interval * Update whats_new.rst
* Updating mne_bids version * Accepting mne 1.7 * Updating whats new file * Enforce moabb 1.7 * Enforce moabb 1.7 * Adding edfio as a dependency * Update pyproject.toml Co-authored-by: Bru <[email protected]> * Update pyproject.toml * Updating versions: keras, scikeras, tensorflow, h5py * Updating versions: keras, scikeras, tensorflow, h5py * Defining tensorflow-io-gcs-filesystem version * Defining tensorflow-io-gcs-filesystem version * Updating to Keras 3 optimizers * Updating code Keras3 * [pre-commit.ci] auto fixes from pre-commit.com hooks * Updating code Keras3 * Updating to Keras 3 functions * [pre-commit.ci] auto fixes from pre-commit.com hooks --------- Co-authored-by: Bru <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* MNT changing the version * MNT changing the version * MNT changing the version in the citation * MNT removing the changelog * MNT changing the whats_new file * MNT updating citation * Fix including version notation * Including none into whats_new.rst * Increase version * Increase version * Adding kobler * Updating the whats_new file * Update moabb/datasets/alphawaves.py * Update CITATION.cff * fix: change to 1.0.1 * fix: add versionadded in doc string * fix: revert to 1.1.0 * Update README.md Co-authored-by: PierreGtch <[email protected]> --------- Co-authored-by: Sylvain Chevallier <[email protected]> Co-authored-by: PierreGtch <[email protected]>
* Renaming test to use pytest * changing the whats new file * fixing path * changing the instruction to keep the coverage * changing the test dev * disabling tests that need to download the dataset * removing function assertNoLogs that it is not present in the python version of the CI. * updating pyproject * renaming back * changing the windowsdataset * changing import * fixing importing * fixing importing * fixing the import * global skip * skip two tests * skip two tests * fixing pyproject.toml * restaring test * moving to improve the revision process * fix: glob patterns for test files --------- Co-authored-by: Sylvain Chevallier <[email protected]>
* Renaming test to use pytest * changing the whats new file * fixing path * changing the instruction to keep the coverage * changing the test dev * disabling tests that need to download the dataset * removing function assertNoLogs that it is not present in the python version of the CI. * updating pyproject * renaming back * changing the windowsdataset * changing import * fixing importing * fixing importing * fixing the import * global skip * skip two tests * skip two tests * fixing pyproject.toml * restaring test * moving to improve the revision process * testing the tests fixed * fix: glob patterns for test files * fix: add whatsnew --------- Co-authored-by: Sylvain Chevallier <[email protected]> Co-authored-by: Sylvain Chevallier <[email protected]>
* Fixed url to Lee2019 * fix: correct download link for Cho2017 dataset, update whatsnew --------- Co-authored-by: Sylvain Chevallier <[email protected]> Co-authored-by: Sylvain Chevallier <[email protected]>
* enh: fix table error * enh: correct font size * enh: update what new * enh: add csv to json converter * Adding script to convert csv to json * [pre-commit.ci] auto fixes from pre-commit.com hooks * generate json for the fixed version of csv * [pre-commit.ci] auto fixes from pre-commit.com hooks * fix: use only 1 json converter * fix: correct table results in docs * enh: add an context file example for right hand feet MI * enh: add files generated locally by doc in gitignore --------- Co-authored-by: Sylvain Chevallier <[email protected]> Co-authored-by: Salim Khazem Macbook-Pro <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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see whats_new.rst for details.