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Merged
merged 6 commits into from
Nov 4, 2024
Merged

python312Packages.numcodecs: 0.13.0 -> 0.13.1 #352309

merged 6 commits into from
Nov 4, 2024

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@doronbehar
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Description of changes

Things done

  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandboxing enabled in nix.conf? (See Nix manual)
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 24.11 Release Notes (or backporting 23.11 and 24.05 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

Add a 👍 reaction to pull requests you find important.

@github-actions github-actions bot added the 6.topic: python Python is a high-level, general-purpose programming language. label Oct 30, 2024
@doronbehar doronbehar mentioned this pull request Oct 30, 2024
Closed
11 tasks
@nix-owners nix-owners bot requested a review from natsukium October 30, 2024 07:59
@ofborg ofborg bot added 11.by: package-maintainer This PR was created by a maintainer of all the package it changes. 10.rebuild-darwin: 101-500 This PR causes between 101 and 500 packages to rebuild on Darwin. 10.rebuild-linux: 101-500 This PR causes between 101 and 500 packages to rebuild on Linux. labels Oct 30, 2024
@doronbehar
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nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 352309

x86_64-linux

⏩ 22 packages marked as broken and skipped:
  • picosnitch
  • picosnitch.dist
  • python311Packages.caffeWithCuda
  • python311Packages.caffeWithCuda.bin
  • python311Packages.dm-sonnet
  • python311Packages.dm-sonnet.dist
  • python311Packages.pymatgen
  • python311Packages.pymatgen.dist
  • python311Packages.sumo
  • python311Packages.sumo.dist
  • python311Packages.sunpy
  • python311Packages.sunpy.dist
  • python311Packages.tensorflow-datasets
  • python311Packages.tensorflow-datasets.dist
  • python312Packages.pymatgen
  • python312Packages.pymatgen.dist
  • python312Packages.sumo
  • python312Packages.sumo.dist
  • tartube
  • tartube.dist
  • tts
  • tts.dist
❌ 147 packages failed to build:
  • home-assistant-component-tests.dremel_3d_printer
  • hydrus
  • hydrus.doc
  • private-gpt
  • private-gpt.dist
  • python311Packages.ffcv
  • python311Packages.ffcv.dist
  • python311Packages.llama-index
  • python311Packages.llama-index-agent-openai
  • python311Packages.llama-index-agent-openai.dist
  • python311Packages.llama-index-cli
  • python311Packages.llama-index-cli.dist
  • python311Packages.llama-index-core
  • python311Packages.llama-index-core.dist
  • python311Packages.llama-index-embeddings-gemini
  • python311Packages.llama-index-embeddings-gemini.dist
  • python311Packages.llama-index-embeddings-google
  • python311Packages.llama-index-embeddings-google.dist
  • python311Packages.llama-index-embeddings-huggingface
  • python311Packages.llama-index-embeddings-huggingface.dist
  • python311Packages.llama-index-embeddings-ollama
  • python311Packages.llama-index-embeddings-ollama.dist
  • python311Packages.llama-index-embeddings-openai
  • python311Packages.llama-index-embeddings-openai.dist
  • python311Packages.llama-index-graph-stores-nebula
  • python311Packages.llama-index-graph-stores-nebula.dist
  • python311Packages.llama-index-graph-stores-neo4j
  • python311Packages.llama-index-graph-stores-neo4j.dist
  • python311Packages.llama-index-graph-stores-neptune
  • python311Packages.llama-index-graph-stores-neptune.dist
  • python311Packages.llama-index-indices-managed-llama-cloud
  • python311Packages.llama-index-indices-managed-llama-cloud.dist
  • python311Packages.llama-index-legacy
  • python311Packages.llama-index-legacy.dist
  • python311Packages.llama-index-llms-ollama
  • python311Packages.llama-index-llms-ollama.dist
  • python311Packages.llama-index-llms-openai
  • python311Packages.llama-index-llms-openai-like
  • python311Packages.llama-index-llms-openai-like.dist
  • python311Packages.llama-index-llms-openai.dist
  • python311Packages.llama-index-multi-modal-llms-openai
  • python311Packages.llama-index-multi-modal-llms-openai.dist
  • python311Packages.llama-index-program-openai
  • python311Packages.llama-index-program-openai.dist
  • python311Packages.llama-index-question-gen-openai
  • python311Packages.llama-index-question-gen-openai.dist
  • python311Packages.llama-index-readers-database
  • python311Packages.llama-index-readers-database.dist
  • python311Packages.llama-index-readers-file
  • python311Packages.llama-index-readers-file.dist
  • python311Packages.llama-index-readers-json
  • python311Packages.llama-index-readers-json.dist
  • python311Packages.llama-index-readers-llama-parse
  • python311Packages.llama-index-readers-llama-parse.dist
  • python311Packages.llama-index-readers-s3
  • python311Packages.llama-index-readers-s3.dist
  • python311Packages.llama-index-readers-twitter
  • python311Packages.llama-index-readers-twitter.dist
  • python311Packages.llama-index-readers-txtai
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  • python311Packages.llama-index-readers-weather
  • python311Packages.llama-index-readers-weather.dist
  • python311Packages.llama-index-vector-stores-chroma
  • python311Packages.llama-index-vector-stores-chroma.dist
  • python311Packages.llama-index-vector-stores-google
  • python311Packages.llama-index-vector-stores-google.dist
  • python311Packages.llama-index-vector-stores-postgres
  • python311Packages.llama-index-vector-stores-postgres.dist
  • python311Packages.llama-index-vector-stores-qdrant
  • python311Packages.llama-index-vector-stores-qdrant.dist
  • python311Packages.llama-index.dist
  • python311Packages.llama-parse
  • python311Packages.llama-parse.dist
  • python311Packages.mmcv
  • python311Packages.mmcv.dist
  • python311Packages.private-gpt
  • python311Packages.private-gpt.dist
  • python312Packages.llama-index
  • python312Packages.llama-index-agent-openai
  • python312Packages.llama-index-agent-openai.dist
  • python312Packages.llama-index-cli
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  • python312Packages.llama-index-core
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  • python312Packages.llama-index-embeddings-gemini
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  • python312Packages.llama-index-embeddings-ollama
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  • python312Packages.llama-index-embeddings-openai
  • python312Packages.llama-index-embeddings-openai.dist
  • python312Packages.llama-index-graph-stores-nebula
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  • python312Packages.llama-index-graph-stores-neo4j
  • python312Packages.llama-index-graph-stores-neo4j.dist
  • python312Packages.llama-index-graph-stores-neptune
  • python312Packages.llama-index-graph-stores-neptune.dist
  • python312Packages.llama-index-indices-managed-llama-cloud
  • python312Packages.llama-index-indices-managed-llama-cloud.dist
  • python312Packages.llama-index-legacy
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  • python312Packages.llama-index-llms-ollama
  • python312Packages.llama-index-llms-ollama.dist
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  • python312Packages.llama-index-question-gen-openai
  • python312Packages.llama-index-question-gen-openai.dist
  • python312Packages.llama-index-readers-database
  • python312Packages.llama-index-readers-database.dist
  • python312Packages.llama-index-readers-file
  • python312Packages.llama-index-readers-file.dist
  • python312Packages.llama-index-readers-json
  • python312Packages.llama-index-readers-json.dist
  • python312Packages.llama-index-readers-llama-parse
  • python312Packages.llama-index-readers-llama-parse.dist
  • python312Packages.llama-index-readers-s3
  • python312Packages.llama-index-readers-s3.dist
  • python312Packages.llama-index-readers-twitter
  • python312Packages.llama-index-readers-twitter.dist
  • python312Packages.llama-index-readers-txtai
  • python312Packages.llama-index-readers-txtai.dist
  • python312Packages.llama-index-readers-weather
  • python312Packages.llama-index-readers-weather.dist
  • python312Packages.llama-index-vector-stores-chroma
  • python312Packages.llama-index-vector-stores-chroma.dist
  • python312Packages.llama-index-vector-stores-google
  • python312Packages.llama-index-vector-stores-google.dist
  • python312Packages.llama-index-vector-stores-postgres
  • python312Packages.llama-index-vector-stores-postgres.dist
  • python312Packages.llama-index-vector-stores-qdrant
  • python312Packages.llama-index-vector-stores-qdrant.dist
  • python312Packages.llama-index.dist
  • python312Packages.llama-parse
  • python312Packages.llama-parse.dist
  • python312Packages.mmcv
  • python312Packages.mmcv.dist
  • python312Packages.private-gpt
  • python312Packages.private-gpt.dist
✅ 388 packages built:
  • apkleaks
  • apkleaks.dist
  • backgroundremover
  • backgroundremover.dist
  • checkov
  • checkov.dist
  • cve-bin-tool
  • cve-bin-tool.dist
  • das
  • das.dist
  • deeptools
  • deeptools.dist
  • deface
  • deface.dist
  • easyocr (python312Packages.easyocr)
  • easyocr.dist (python312Packages.easyocr.dist)
  • home-assistant-component-tests.environment_canada
  • hp2p
  • immich-machine-learning
  • immich-machine-learning.dist
  • intensity-normalization (python312Packages.intensity-normalization)
  • intensity-normalization.dist (python312Packages.intensity-normalization.dist)
  • jadx
  • napari (python312Packages.napari)
  • napari.dist (python312Packages.napari.dist)
  • ome_zarr (python312Packages.ome-zarr)
  • ome_zarr.dist (python312Packages.ome-zarr.dist)
  • prowler
  • prowler.dist
  • python311Packages.albumentations
  • python311Packages.albumentations.dist
  • python311Packages.ale-py
  • python311Packages.ale-py.dist
  • python311Packages.aplpy
  • python311Packages.aplpy.dist
  • python311Packages.arviz
  • python311Packages.arviz.dist
  • python311Packages.ax-platform
  • python311Packages.ax-platform.dist
  • python311Packages.bambi
  • python311Packages.bambi.dist
  • python311Packages.batchgenerators
  • python311Packages.batchgenerators.dist
  • python311Packages.bsuite
  • python311Packages.bsuite.dist
  • python311Packages.caffe
  • python311Packages.caffe.bin
  • python311Packages.catboost
  • python311Packages.catboost.dist
  • python311Packages.chart-studio
  • python311Packages.chart-studio.dist
  • python311Packages.cltk
  • python311Packages.cltk.dist
  • python311Packages.compressai
  • python311Packages.compressai.dist
  • python311Packages.corner
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  • python311Packages.dalle-mini
  • python311Packages.dalle-mini.dist
  • python311Packages.dash
  • python311Packages.dash-bootstrap-components
  • python311Packages.dash-bootstrap-components.dist
  • python311Packages.dash.dist
  • python311Packages.dask-image
  • python311Packages.dask-image.dist
  • python311Packages.dremel3dpy
  • python311Packages.dremel3dpy.dist
  • python311Packages.easyocr
  • python311Packages.easyocr.dist
  • python311Packages.env-canada
  • python311Packages.env-canada.dist
  • python311Packages.experiment-utilities
  • python311Packages.experiment-utilities.dist
  • python311Packages.explorerscript
  • python311Packages.explorerscript.dist
  • python311Packages.fastai
  • python311Packages.fastai.dist
  • python311Packages.flowmc
  • python311Packages.flowmc.dist
  • python311Packages.glymur
  • python311Packages.glymur.dist
  • python311Packages.gradio
  • python311Packages.gradio.dist
  • python311Packages.gymnasium
  • python311Packages.gymnasium.dist
  • python311Packages.halide
  • python311Packages.handout
  • python311Packages.handout.dist
  • python311Packages.hvplot
  • python311Packages.hvplot.dist
  • python311Packages.igraph
  • python311Packages.igraph.dist
  • python311Packages.imagecorruptions
  • python311Packages.imagecorruptions.dist
  • python311Packages.imageio
  • python311Packages.imageio.dist
  • python311Packages.insightface
  • python311Packages.insightface.dist
  • python311Packages.intake
  • python311Packages.intake.dist
  • python311Packages.intensity-normalization
  • python311Packages.intensity-normalization.dist
  • python311Packages.k-diffusion
  • python311Packages.k-diffusion.dist
  • python311Packages.kmapper
  • python311Packages.kmapper.dist
  • python311Packages.leidenalg
  • python311Packages.leidenalg.dist
  • python311Packages.lime
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  • python311Packages.meshtastic
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  • python311Packages.multiscale-spatial-image
  • python311Packages.multiscale-spatial-image.dist
  • python311Packages.mung
  • python311Packages.mung.dist
  • python311Packages.muscima
  • python311Packages.muscima.dist
  • python311Packages.napari
  • python311Packages.napari-svg
  • python311Packages.napari-svg.dist
  • python311Packages.napari.dist
  • python311Packages.niaarm
  • python311Packages.niaarm.dist
  • python311Packages.niworkflows
  • python311Packages.niworkflows.dist
  • python311Packages.numcodecs
  • python311Packages.numcodecs.dist
  • python311Packages.nutpie
  • python311Packages.nutpie.dist
  • python311Packages.ome-zarr
  • python311Packages.ome-zarr.dist
  • python311Packages.omrdatasettools
  • python311Packages.omrdatasettools.dist
  • python311Packages.open-clip-torch
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  • python311Packages.orange3
  • python311Packages.orange3.dist
  • python311Packages.pettingzoo
  • python311Packages.pettingzoo.dist
  • python311Packages.pims
  • python311Packages.pims.dist
  • python311Packages.plotly
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  • python311Packages.psd-tools
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  • python311Packages.pvextractor
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  • python311Packages.pyannote-audio
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  • python312Packages.niworkflows.dist
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  • python312Packages.numcodecs.dist
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  • python312Packages.open-clip-torch.dist
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  • python312Packages.orange3.dist
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  • python312Packages.psd-tools
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  • python312Packages.pvextractor
  • python312Packages.pvextractor.dist
  • python312Packages.pyannote-audio
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  • python312Packages.pyannote-pipeline
  • python312Packages.pyannote-pipeline.dist
  • python312Packages.pyrender
  • python312Packages.pyrender.dist
  • python312Packages.reflex
  • python312Packages.reflex.dist
  • python312Packages.reproject
  • python312Packages.reproject.dist
  • python312Packages.scikit-image
  • python312Packages.scikit-image.dist
  • python312Packages.scikit-tda
  • python312Packages.scikit-tda.dist
  • python312Packages.skytemple-dtef
  • python312Packages.skytemple-dtef.dist
  • python312Packages.skytemple-files
  • python312Packages.skytemple-files.dist
  • python312Packages.skytemple-ssb-debugger
  • python312Packages.skytemple-ssb-debugger.dist
  • python312Packages.slicedimage
  • python312Packages.slicedimage.dist
  • python312Packages.spacy
  • python312Packages.spacy-loggers
  • python312Packages.spacy-loggers.dist
  • python312Packages.spacy-lookups-data
  • python312Packages.spacy-lookups-data.dist
  • python312Packages.spacy-transformers
  • python312Packages.spacy-transformers.dist
  • python312Packages.spacy.dist
  • python312Packages.spectral-cube
  • python312Packages.spectral-cube.dist
  • python312Packages.stytra
  • python312Packages.stytra.dist
  • python312Packages.synergy
  • python312Packages.synergy.dist
  • python312Packages.test-tube
  • python312Packages.test-tube.dist
  • python312Packages.textacy
  • python312Packages.textacy.dist
  • python312Packages.textnets
  • python312Packages.textnets.dist
  • python312Packages.tifffile
  • python312Packages.tifffile.dist
  • python312Packages.wandb
  • python312Packages.wandb.dist
  • python312Packages.webdataset
  • python312Packages.webdataset.dist
  • python312Packages.xarray-datatree
  • python312Packages.xarray-datatree.dist
  • python312Packages.zarr
  • python312Packages.zarr.dist
  • quark-engine
  • quark-engine.dist
  • rclip
  • rclip.dist
  • skytemple
  • skytemple.dist
  • streamcontroller
  • tartube-yt-dlp
  • tartube-yt-dlp.dist
  • theharvester
  • theharvester.dist
  • whisper-ctranslate2
  • whisper-ctranslate2.dist

@doronbehar
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hydrus is the only real regression according to hydra-check (a single test was failing). Now I updated it and it works. Will merge in a few days.. (Giving time to @evanjs & @dali99 to respond, although it is a trivial update).

@ofborg ofborg bot requested review from D4ndellion and evanjs October 30, 2024 23:32
@doronbehar doronbehar force-pushed the pkg/numcodecs@attempt2 branch from bf1ceff to 0aa6dcd Compare October 31, 2024 12:08
@doronbehar doronbehar changed the title python312Packages.numcodecs: 0.12.1 -> 0.13.1 python312Packages.numcodecs: 0.13.0 -> 0.13.1 Oct 31, 2024
natsukium
natsukium reviewed Nov 2, 2024
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@doronbehar
python312Packages.zarr: modernize
0e3338f 
Use build-system & dependencies attributes; Don't use `with lib;` in
meta, and order inputs.
@doronbehar
hydrus: 591 -> 595
6f9d95f 
Diff: hydrusnetwork/hydrus@refs/tags/v591...v595
@doronbehar doronbehar force-pushed the pkg/numcodecs@attempt2 branch from 0aa6dcd to 6f9d95f Compare November 2, 2024 19:33
@doronbehar
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A new Nixpkgs review report should be needed now that many python updates were merged to master...

@doronbehar
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I ran nixpkgs-review and it hanged at a certain point, but it seems to have finished:

image

All of the above packages are already failing on master as I checked before. So I'm merging.

@doronbehar doronbehar merged commit bfb0dc4 into NixOS:master Nov 4, 2024
26 of 27 checks passed
@doronbehar doronbehar deleted the pkg/numcodecs@attempt2 branch November 4, 2024 15:47
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@evanjs evanjs Awaiting requested review from evanjs

@D4ndellion D4ndellion Awaiting requested review from D4ndellion

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6.topic: python Python is a high-level, general-purpose programming language. 10.rebuild-darwin: 101-500 This PR causes between 101 and 500 packages to rebuild on Darwin. 10.rebuild-linux: 101-500 This PR causes between 101 and 500 packages to rebuild on Linux. 11.by: package-maintainer This PR was created by a maintainer of all the package it changes.

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@doronbehar @natsukium