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Possible bug: final batch of pairwise comparisons is not processed?

Status: Open.

#30 In OmarOakheart/nPhase;

· jdenkena opened on Aug 10, 2026

HiFi reads

Status: Open.

#29 In OmarOakheart/nPhase;

· rsandean opened on Jun 7, 2025

Any advice on how to create a haplotype-resolved assembly form the phase FastQ reads

Status: Open.

#27 In OmarOakheart/nPhase;

· mdondrup opened on Jan 23, 2024

nphase takes a long time at GATK step

Status: Open.

#26 In OmarOakheart/nPhase;

· mdondrup opened on Jan 12, 2024

Extract phased variants or reads

Status: Open.

#23 In OmarOakheart/nPhase;

· Adamtaranto opened on Oct 28, 2022

Duration and Heterozygosity

Status: Open.

#22 In OmarOakheart/nPhase;

· rmormando opened on Sep 22, 2022

nPhase needs a guide/tutorial for working on large/very heterozygous genomes

Status: Open.

#13 In OmarOakheart/nPhase;

· OmarOakheart opened on Oct 13, 2021

nPhase on one chromosome

Status: Open.

#12 In OmarOakheart/nPhase;

· elsasverris opened on Oct 13, 2021

nPhase is too slow/memory intensive

Status: Open.

#11 In OmarOakheart/nPhase;

· OmarOakheart opened on Oct 2, 2021

nPhase has no option to set max heterozygosity level

Status: Open.

#10 In OmarOakheart/nPhase;

· OmarOakheart opened on Oct 2, 2021

ZeroDivisionError in assignLongReadToSNPs when samLines < 100

Status: Open.

#9 In OmarOakheart/nPhase;

· a-lud opened on Sep 29, 2021

Running nphase partial with a .bam file or a .sam file that isn't sorted or has a header

Status: Open.

#8 In OmarOakheart/nPhase;

· OmarOakheart opened on Jun 2, 2021