Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Konnektor integration #927

Open
wants to merge 18 commits into
base: main
Choose a base branch
from
Open

Konnektor integration #927

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
18 commits
Select commit Hold shift + click to select a range
7017c40
draft for Konnektor integration
RiesBen Sep 3, 2024
d08ceb1
draft for Konnektor integration
RiesBen Sep 3, 2024
493297b
changing back to mappers iterable as parameter
RiesBen Sep 4, 2024
1263948
consistently using Konnektor also in loading fep or orion net
RiesBen Sep 4, 2024
71405d9
adding handles for Konnektor functionality.
RiesBen Sep 4, 2024
393c020
used black for formatting.
RiesBen Sep 4, 2024
0489d93
used black for formatting.
RiesBen Sep 4, 2024
56b4614
Update environment.yml
RiesBen Oct 17, 2024
529ef4b
Update test_network_planning.py
RiesBen Oct 17, 2024
fca1acd
fixes for unittests:
RiesBen Oct 22, 2024
07e8fde
Update test_network_planning.py
RiesBen Oct 29, 2024
281b6c1
updating docstrings
atravitz Nov 6, 2024
eca8154
adjusting n_processes docstring language
atravitz Nov 6, 2024
13fd51f
fixing central_ligand default
atravitz Nov 6, 2024
16ee8e1
rename mappers to mapper to avoid api break
atravitz Nov 6, 2024
dc63ad8
Revert "rename mappers to mapper to avoid api break"
atravitz Nov 6, 2024
46986af
fixing mapper/s to avoid api break
atravitz Nov 6, 2024
24a7abd
switching arg names from 'ligands' to new 'components' keyword to mat…
atravitz Nov 6, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions environment.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ channels:
dependencies:
- duecredit<0.10
- kartograf>=1.0.0
- konnektor
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I think we need to make a Konnektor v0.2.0 release with this change, then pin this with konnektor>=v0.2.0.

- lomap2>=3.0.0
- numpy
- networkx
Expand Down
Loading
Loading