flush hdf5 files to try fix #877 #642
Workflow file for this run
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| name: CMake Ubuntu | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| steps: | |
| - name: Build Info | |
| run: | | |
| uname -a | |
| gcc -v | |
| clang -v | |
| - name: CCache | |
| id: cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.ccache | |
| key: ${{ runner.os }}-ccache-${{ hashFiles('hashFile.txt') }} | |
| restore-keys: ${{ runner.os }}-ccache- | |
| - name: Cache PIP (Linux) | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Clone PHARE | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11.1' | |
| - name: Install system deps (openmpi, hdf5, ccache,...) | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libopenmpi-dev openmpi-bin libhdf5-openmpi-dev ccache | |
| - name: Ensure ccache uses ~/.ccache | |
| run: | | |
| mkdir -p ~/.ccache | |
| ccache --set-config=cache_dir=~/.ccache | |
| ccache --get-config=cache_dir | |
| - name: Install python deps | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -r requirements.txt | |
| - name: Create Build Environment | |
| run: cmake -E make_directory ${{runner.workspace}}/build | |
| - name: Configure CMake | |
| # builds samrai with 2 threads as it does not OOM (yet) | |
| working-directory: ${{runner.workspace}}/build | |
| run: | | |
| set -ex | |
| cmake $GITHUB_WORKSPACE | |
| cd ${{runner.workspace}}/PHARE/subprojects/samrai && mkdir build && cd build | |
| cmake .. -DENABLE_SAMRAI_TESTS=OFF -DCMAKE_BUILD_TYPE=RelWithDebInfo | |
| make -j2 && sudo make install && cd ../.. && rm -rf samrai | |
| cd ${{runner.workspace}}/build && rm -rf * | |
| cmake $GITHUB_WORKSPACE -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON --fresh \ | |
| -DCMAKE_BUILD_TYPE=RelWithDebInfo -Dasan=OFF \ | |
| -DCMAKE_C_COMPILER_LAUNCHER=ccache \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache \ | |
| -DlowResourceTests=ON -DdevMode=ON -Dbench=ON \ | |
| -DCMAKE_CXX_FLAGS="-DPHARE_DIAG_DOUBLES=1 " -Dphare_configurator=ON | |
| - name: Build | |
| working-directory: ${{runner.workspace}}/build | |
| run: | | |
| cmake --build . # OOM if more threads | |
| - name: Test | |
| working-directory: ${{runner.workspace}}/build | |
| run: ctest -j 2 --output-on-failure |