CrossInfectMTB

Repo for bioinformatic analysis about MTB infections

Overview

This repository contains scripts for the bioinformatic analysis of Mycobacterium tuberculosis (MTB) infections, focusing on host-strain compatibility and infection outcomes. The analysis includes processing of cytometry data, microscopy images, and RNA sequencing data.

Repository Structure

• process_cytometrydata/: Scripts for processing flow cytometry data.
• process_microscopy/: Scripts for processing microscopy infectio ratio.
• process_rnaseq/: Scripts for processing RNA sequencing data and comparisons.
• process_rnaseq-mappings/: Scripts for managing RNA-seq read mappings.
• LICENSE: License information.
• README.md: This file.

Getting Started

Prerequisites

• R

Installation

1. Clone the repository:

   git clone https://github.com/PathoGenOmics-Lab/CrossInfectMTB.git
   cd CrossInfectMTB